Mycoplasma pneumoniae from the respiratory tract and beyond

KB Waites, L Xiao, Y Liu, MF Balish… - Clinical microbiology …, 2017 - Am Soc Microbiol
Mycoplasma pneumoniae is an important cause of respiratory tract infections in children as
well as adults that can range in severity from mild to life-threatening. Over the past several …

[HTML][HTML] Mycoplasmas as host pantropic and specific pathogens: clinical implications, gene transfer, virulence factors, and future perspectives

A Dawood, SA Algharib, G Zhao, T Zhu, M Qi… - Frontiers in cellular …, 2022 - frontiersin.org
Mycoplasmas as economically important and pantropic pathogens can cause similar clinical
diseases in different hosts by eluding host defense and establishing their niches despite …

NetworkAnalyst for statistical, visual and network-based meta-analysis of gene expression data

J Xia, EE Gill, REW Hancock - Nature protocols, 2015 - nature.com
Meta-analysis of gene expression data sets is increasingly performed to help identify robust
molecular signatures and to gain insights into underlying biological processes. The …

Defining a minimal cell: essentiality of small ORF s and nc RNA s in a genome‐reduced bacterium

M Lluch‐Senar, J Delgado, WH Chen… - Molecular systems …, 2015 - embopress.org
Identifying all essential genomic components is critical for the assembly of minimal artificial
life. In the genome‐reduced bacterium Mycoplasma pneumoniae, we found that small ORF s …

[HTML][HTML] Visualizing translation dynamics at atomic detail inside a bacterial cell

L Xue, S Lenz, M Zimmermann-Kogadeeva, D Tegunov… - Nature, 2022 - nature.com
Translation is the fundamental process of protein synthesis and is catalysed by the ribosome
in all living cells. Here we use advances in cryo-electron tomography and sub-tomogram …

Bacterial antisense RNAs are mainly the product of transcriptional noise

V Lloréns-Rico, J Cano, T Kamminga, R Gil… - Science …, 2016 - science.org
cis-Encoded antisense RNAs (asRNAs) are widespread along bacterial transcriptomes.
However, the role of most of these RNAs remains unknown, and there is an ongoing …

Why build whole-cell models?

J Carrera, MW Covert - Trends in cell biology, 2015 - cell.com
Our ability to build computational models that account for all known gene functions in a cell
has increased dramatically. But why build whole-cell models, and how can they best be …

[HTML][HTML] Identification of the Components Involved in Cyclic Di-AMP Signaling in Mycoplasma pneumoniae

C Blötz, K Treffon, V Kaever, F Schwede… - Frontiers in …, 2017 - frontiersin.org
Bacteria often use cyclic dinucleotides as second messengers for signal transduction. While
the classical molecule c-di-GMP is involved in lifestyle selection, the functions of the more …

Impact of C‐terminal amino acid composition on protein expression in bacteria

M Weber, R Burgos, E Yus, JS Yang… - Molecular systems …, 2020 - embopress.org
The C‐terminal sequence of a protein is involved in processes such as efficiency of
translation termination and protein degradation. However, the general relationship between …

[HTML][HTML] Proteomic and metaproteomic approaches to understand host–microbe interactions

AE Starr, SA Deeke, L Li, X Zhang, R Daoud… - Analytical …, 2018 - ACS Publications
The human body is composed not only of human cells but is occupied by bacteria, archaea,
fungi, and viruses; this ensemble of organisms (microbiota) and their expressed genes are …