[HTML][HTML] On structural and practical identifiability

FG Wieland, AL Hauber, M Rosenblatt… - Current Opinion in …, 2021 - Elsevier
We discuss issues of structural and practical identifiability of partially observed differential
equations which are often applied in systems biology. The development of mathematical …

In-host mathematical modelling of COVID-19 in humans

EA Hernandez-Vargas, JX Velasco-Hernandez - Annual reviews in control, 2020 - Elsevier
COVID-19 pandemic has underlined the impact of emergent pathogens as a major threat to
human health. The development of quantitative approaches to advance comprehension of …

[HTML][HTML] Why is it difficult to accurately predict the COVID-19 epidemic?

WC Roda, MB Varughese, D Han, MY Li - Infectious disease modelling, 2020 - Elsevier
Since the COVID-19 outbreak in Wuhan City in December of 2019, numerous model
predictions on the COVID-19 epidemics in Wuhan and other parts of China have been …

[HTML][HTML] High contagiousness and rapid spread of severe acute respiratory syndrome coronavirus 2

S Sanche, YT Lin, C Xu… - Emerging infectious …, 2020 - ncbi.nlm.nih.gov
Severe acute respiratory syndrome coronavirus 2 is the causative agent of the ongoing
coronavirus disease pandemic. Initial estimates of the early dynamics of the outbreak in …

Estimation of breast cancer overdiagnosis in a US breast screening cohort

MD Ryser, J Lange, LYT Inoue, ES O'Meara… - Annals of internal …, 2022 - acpjournals.org
Background: Mammography screening can lead to overdiagnosis—that is, screen-detected
breast cancer that would not have caused symptoms or signs in the remaining lifetime …

Systems biology informed deep learning for inferring parameters and hidden dynamics

A Yazdani, L Lu, M Raissi… - PLoS computational …, 2020 - journals.plos.org
Mathematical models of biological reactions at the system-level lead to a set of ordinary
differential equations with many unknown parameters that need to be inferred using …

Fitting dynamic models to epidemic outbreaks with quantified uncertainty: A primer for parameter uncertainty, identifiability, and forecasts

G Chowell - Infectious Disease Modelling, 2017 - Elsevier
Mathematical models provide a quantitative framework with which scientists can assess
hypotheses on the potential underlying mechanisms that explain patterns in observed data …

[图书][B] Uncertainty quantification: theory, implementation, and applications

RC Smith - 2024 - SIAM
Uncertainty quantification serves a central role for simulation-based analysis of physical,
engineering, and biological applications using mechanistic models. From a broad …

Estimation of tumor cell total mRNA expression in 15 cancer types predicts disease progression

S Cao, JR Wang, S Ji, P Yang, Y Dai, S Guo… - Nature …, 2022 - nature.com
Single-cell RNA sequencing studies have suggested that total mRNA content correlates with
tumor phenotypes. Technical and analytical challenges, however, have so far impeded at …

Uncovering ecological state dynamics with hidden Markov models

BT McClintock, R Langrock, O Gimenez, E Cam… - Ecology …, 2020 - Wiley Online Library
Ecological systems can often be characterised by changes among a finite set of underlying
states pertaining to individuals, populations, communities or entire ecosystems through time …