Mechanisms and regulation of alternative pre-mRNA splicing

Y Lee, DC Rio - Annual review of biochemistry, 2015 - annualreviews.org
Precursor messenger RNA (pre-mRNA) splicing is a critical step in the posttranscriptional
regulation of gene expression, providing significant expansion of the functional proteome of …

[HTML][HTML] Pre-mRNA processing reaches back totranscription and ahead to translation

MJ Moore, NJ Proudfoot - Cell, 2009 - cell.com
The pathway from gene activation in the nucleus to mRNA translation and decay at specific
locations in the cytoplasm is both streamlined and highly interconnected. This review …

[PDF][PDF] Splicing of nascent RNA coincides with intron exit from RNA polymerase II

FC Oesterreich, L Herzel, K Straube, K Hujer, J Howard… - Cell, 2016 - cell.com
Protein-coding genes in eukaryotes are transcribed by RNA polymerase II (Pol II) and
introns are removed from pre-mRNA by the spliceosome. Understanding the time lag …

[HTML][HTML] The centrality of RNA

PA Sharp - Cell, 2009 - cell.com
New roles for RNAs in biology continue to emerge, and a glance at the history of RNAs may
prepare molecular biologists for future discoveries about these powerful molecules. A …

[HTML][HTML] Post-transcriptional spliceosomes are retained in nuclear speckles until splicing completion

C Girard, CL Will, J Peng, EM Makarov… - Nature …, 2012 - nature.com
There is little quantitative information regarding how much splicing occurs co-
transcriptionally in higher eukaryotes, and it remains unclear where precisely splicing occurs …

Nascent-seq indicates widespread cotranscriptional pre-mRNA splicing in Drosophila

YL Khodor, J Rodriguez, KC Abruzzi… - Genes & …, 2011 - genesdev.cshlp.org
To determine the prevalence of cotranscriptional splicing in Drosophila, we sequenced
nascent RNA transcripts from Drosophila S2 cells as well as from Drosophila heads. Eighty …

Chemistry and biology of self-cleaving ribozymes

RM Jimenez, JA Polanco, A Lupták - Trends in biochemical sciences, 2015 - cell.com
Self-cleaving ribozymes were discovered 30 years ago, but their biological distribution and
catalytic mechanisms are only beginning to be defined. Each ribozyme family is defined by a …

The splicing factor SC35 has an active role in transcriptional elongation

S Lin, G Coutinho-Mansfield, D Wang… - Nature structural & …, 2008 - nature.com
Mounting evidence suggests that transcription and RNA processing are intimately coupled
in vivo, although each process can occur independently in vitro. It is generally thought that …

Co-transcriptional gene regulation in eukaryotes and prokaryotes

M Shine, J Gordon, L Schärfen, D Zigackova… - … Reviews Molecular Cell …, 2024 - nature.com
Many steps of RNA processing occur during transcription by RNA polymerases. Co-
transcriptional activities are deemed commonplace in prokaryotes, in which the lack of …

[PDF][PDF] SR proteins function in coupling RNAP II transcription to pre-mRNA splicing

R Das, J Yu, Z Zhang, MP Gygi, AR Krainer, SP Gygi… - Molecular cell, 2007 - cell.com
Transcription and splicing are functionally coupled, resulting in highly efficient splicing of
RNA polymerase II (RNAP II) transcripts. The mechanism involved in this coupling is not …