Enablers and challenges of spatial omics, a melting pot of technologies
T Alexandrov, J Saez‐Rodriguez… - Molecular Systems …, 2023 - embopress.org
Spatial omics has emerged as a rapidly growing and fruitful field with hundreds of
publications presenting novel methods for obtaining spatially resolved information for any …
publications presenting novel methods for obtaining spatially resolved information for any …
Opportunities and challenges for deep learning in cell dynamics research
B Chai, C Efstathiou, H Yue, VM Draviam - Trends in Cell Biology, 2024 - cell.com
The growth of artificial intelligence (AI) has led to an increase in the adoption of computer
vision and deep learning (DL) techniques for the evaluation of microscopy images and …
vision and deep learning (DL) techniques for the evaluation of microscopy images and …
SpatialData: an open and universal data framework for spatial omics
Spatially resolved omics technologies are transforming our understanding of biological
tissues. However, the handling of uni-and multimodal spatial omics datasets remains a …
tissues. However, the handling of uni-and multimodal spatial omics datasets remains a …
Image processing tools for petabyte-scale light sheet microscopy data
Light sheet microscopy is a powerful technique for high-speed three-dimensional imaging of
subcellular dynamics and large biological specimens. However, it often generates datasets …
subcellular dynamics and large biological specimens. However, it often generates datasets …
A data portal for providing standardized annotations for cryo-electron tomography
U Ermel, A Cheng, JX Ni, J Gadling… - Nature …, 2024 - nature.com
We present the cryoET Data Por-tal (https://cryoetdataportal. czscience. com/), containing
annotated cryoET datasets in standardized formats, as a resource for the cryoET community …
annotated cryoET datasets in standardized formats, as a resource for the cryoET community …
WebAtlas pipeline for integrated single-cell and spatial transcriptomic data
T Li, D Horsfall, D Basurto-Lozada, K Roberts… - Nature …, 2024 - nature.com
Single-cell and spatial transcrip-tomics illuminate complementary features of tissues.
Computational integration can synergize these technologies to resolve cell types and …
Computational integration can synergize these technologies to resolve cell types and …
A comparison of neuroelectrophysiology databases
As data sharing has become more prevalent, three pillars-archives, standards, and analysis
tools-have emerged as critical components in facilitating effective data sharing and …
tools-have emerged as critical components in facilitating effective data sharing and …
Building a FAIR image data ecosystem for microscopy communities
I Kemmer, A Keppler, B Serrano-Solano… - Histochemistry and Cell …, 2023 - Springer
Bioimaging has now entered the era of big data with faster-than-ever development of
complex microscopy technologies leading to increasingly complex datasets. This enormous …
complex microscopy technologies leading to increasingly complex datasets. This enormous …
Connecting theory and experiment in cell and tissue mechanics
C Schwayer, DB Brückner - Journal of Cell Science, 2023 - journals.biologists.com
Understanding complex living systems, which are fundamentally constrained by physical
phenomena, requires combining experimental data with theoretical physical and …
phenomena, requires combining experimental data with theoretical physical and …
Moving beyond the desktop: prospects for practical bioimage analysis via the web
As biological imaging continues to rapidly advance, it results in increasingly complex image
data, necessitating a reevaluation of conventional bioimage analysis methods and their …
data, necessitating a reevaluation of conventional bioimage analysis methods and their …