Every step of the way: integrins in cancer progression and metastasis

H Hamidi, J Ivaska - Nature Reviews Cancer, 2018 - nature.com
Cell adhesion to the extracellular matrix is fundamental to tissue integrity and human health.
Integrins are the main cellular adhesion receptors that through multifaceted roles as …

Focal adhesion dynamics in cellular function and disease

YG Mishra, B Manavathi - Cellular signalling, 2021 - Elsevier
Acting as a bridge between the cytoskeleton of the cell and the extra cellular matrix (ECM),
the cell-ECM adhesions with integrins at their core, play a major role in cell signalling to …

TrackMate 7: integrating state-of-the-art segmentation algorithms into tracking pipelines

D Ershov, MS Phan, JW Pylvänäinen, SU Rigaud… - Nature …, 2022 - nature.com
TrackMate is an automated tracking software used to analyze bioimages and is distributed
as a Fiji plugin. Here, we introduce a new version of TrackMate. TrackMate 7 is built to …

Democratising deep learning for microscopy with ZeroCostDL4Mic

L von Chamier, RF Laine, J Jukkala, C Spahn… - Nature …, 2021 - nature.com
Deep Learning (DL) methods are powerful analytical tools for microscopy and can
outperform conventional image processing pipelines. Despite the enthusiasm and …

Enhancement of efferocytosis through biased FPR2 signaling attenuates intestinal inflammation

MY Wu, YJ Ge, EJ Wang, QW Liao, ZY Ren… - EMBO molecular …, 2023 - embopress.org
Efficient clearance of dying cells (efferocytosis) is an evolutionarily conserved process for
tissue homeostasis. Genetic enhancement of efferocytosis exhibits therapeutic potential for …

Enzymatically-degradable alginate hydrogels promote cell spreading and in vivo tissue infiltration

A Lueckgen, DS Garske, A Ellinghaus, DJ Mooney… - Biomaterials, 2019 - Elsevier
Enzymatically-degradable materials recapitulate the dynamic and reciprocal interactions
between cells and their native microenvironment by allowing cells to actively shape the …

[HTML][HTML] Automated cell tracking using StarDist and TrackMate

E Fazeli, NH Roy, G Follain, RF Laine… - …, 2020 - ncbi.nlm.nih.gov
The ability of cells to migrate is a fundamental physiological process involved in embryonic
development, tissue homeostasis, immune surveillance, and wound healing. Therefore, the …

Cell-derived matrices for studying cell proliferation and directional migration in a complex 3D microenvironment

R Kaukonen, G Jacquemet, H Hamidi, J Ivaska - Nature protocols, 2017 - nature.com
Abstract 2D surfaces offer simple analysis of cells in culture, yet these often yield different
cell morphologies and responses from those observed in vivo. Considerable effort has …

MYO10-filopodia support basement membranes at pre-invasive tumor boundaries

E Peuhu, G Jacquemet, CLGJ Scheele, A Isomursu… - Developmental Cell, 2022 - cell.com
Ductal carcinoma in situ (DCIS) is a pre-invasive stage of breast cancer. During invasion, the
encapsulating DCIS basement membrane (BM) is compromised, and tumor cells invade the …

Cell matrix adhesion in cell migration

JRW Conway, G Jacquemet - Essays in biochemistry, 2019 - portlandpress.com
The ability of cells to migrate is a fundamental physiological process involved in embryonic
development, tissue homeostasis, immune surveillance and wound healing. In order for …