[HTML][HTML] Metagenomics approaches for the detection and surveillance of emerging and recurrent plant pathogens

E Piombo, A Abdelfattah, S Droby, M Wisniewski… - Microorganisms, 2021 - mdpi.com
Globalization has a dramatic effect on the trade and movement of seeds, fruits and
vegetables, with a corresponding increase in economic losses caused by the introduction of …

Adaptive genetic traits in pelagic freshwater microbes

MC Chiriac, M Haber… - Environmental …, 2023 - Wiley Online Library
Pelagic microbes have adopted distinct strategies to inhabit the pelagial of lakes and
oceans and can be broadly categorized in two groups: free‐living, specialized oligotrophs …

[HTML][HTML] 绿弯菌的研究现状及展望

鲜文东, 张潇橦, 李文均 - 微生物学报, 2020 - actamicro.ijournals.cn
绿弯菌是一个深度分支的门级别细菌类群, 广泛分布于生物圈各种生境. 现已生效发表的绿弯菌
构成9 个纲, 但仅包含56 个种; 基于分子生态学的研究结果表明尚有大量绿弯菌类群仍是未培养 …

[HTML][HTML] Hidden in plain sight—highly abundant and diverse planktonic freshwater Chloroflexi

M Mehrshad, MM Salcher, Y Okazaki, S Nakano… - Microbiome, 2018 - Springer
Background Representatives of the phylum Chloroflexi, though reportedly highly abundant
in the extensive deep water habitats of both marine (SAR202 up to 30% of total prokaryotes) …

[HTML][HTML] In the right place, at the right time: the integration of bacteria into the Plankton Ecology Group model

H Park, T Shabarova, MM Salcher, L Kosová… - Microbiome, 2023 - Springer
Background Planktonic microbial communities have critical impacts on the pelagic food web
and water quality status in freshwater ecosystems, yet no general model of bacterial …

Niche-directed evolution modulates genome architecture in freshwater Planctomycetes

AŞ Andrei, MM Salcher, M Mehrshad… - The ISME …, 2019 - academic.oup.com
Freshwater environments teem with microbes that do not have counterparts in culture
collections or genetic data available in genomic repositories. Currently, our apprehension of …

[HTML][HTML] Distributions and sources of isoprenoidal GDGTs in Lake Lugano and other central European (peri-) alpine lakes: Lessons for their use as paleotemperature …

JSS Damsté, Y Weber, J Zopfi, MF Lehmann… - Quaternary Science …, 2022 - Elsevier
Isoprenoidal glycerol dialkyl glycerol tetraether (isoGDGT) lipids occur ubiquitously in
freshwater and marine environments. Since their distribution varies with temperature …

Remarkable characteristics and distinct community of biofilms on the photoaged polyethylene films in riverine microcosms

H Huang, P Liu, Y Shi, X Wu, S Gao - Environmental Pollution, 2022 - Elsevier
Recalcitrant plastics in the environment are gradually fragmented into weathered debris
distinguished from their original state by the integrative action of influencing factors, such as …

[HTML][HTML] Microbial ecology of full-scale wastewater treatment systems in the Polar Arctic Circle: Archaea, Bacteria and Fungi

A Gonzalez-Martinez, M Sihvonen… - Scientific Reports, 2018 - nature.com
Seven full-scale biological wastewater treatment systems located in the Polar Arctic Circle
region in Finland were investigated to determine their Archaea, Bacteria and Fungi …

Genome‐resolved viral and cellular metagenomes revealed potential key virus‐host interactions in a deep freshwater lake

Y Okazaki, Y Nishimura, T Yoshida… - Environmental …, 2019 - Wiley Online Library
Metagenomics has dramatically expanded the known virosphere, but freshwater viral
diversity and their ecological interaction with hosts remain poorly understood. Here, we …