GLYCAM06: a generalizable biomolecular force field. Carbohydrates

KN Kirschner, AB Yongye… - Journal of …, 2008 - Wiley Online Library
A new derivation of the GLYCAM06 force field, which removes its previous specificity for
carbohydrates, and its dependency on the AMBER force field and parameters, is presented …

The role of hydrogen bonding in non-ionic polymer adsorption to cellulose nanocrystals and silica colloids

MS Reid, M Villalobos, ED Cranston - Current Opinion in Colloid & Interface …, 2017 - Elsevier
A piqued interest in nanocellulose has recently arisen due to the growing need to use
sustainable and renewable materials in place of those that are derived from petrochemical …

Can the protein/carbohydrate (P/C) ratio of exopolymeric substances (EPS) be used as a proxy for their 'stickiness' and aggregation propensity?

PH Santschi, C Xu, KA Schwehr, P Lin, L Sun, WC Chin… - Marine Chemistry, 2020 - Elsevier
Microbially secreted exopolymeric substances (EPS), rich in polysaccharides and proteins,
make up an important part of natural organic matter in the ocean, especially marine snow …

Conformational properties of glucose-based disaccharides investigated using molecular dynamics simulations with local elevation umbrella sampling

L Perić-Hassler, HS Hansen, R Baron… - Carbohydrate …, 2010 - Elsevier
Explicit-solvent molecular dynamics (MD) simulations of the 11 glucose-based
disaccharides in water at 300K and 1bar are reported. The simulations were carried out with …

Structural reorganization of molecular sheets derived from cellulose II by molecular dynamics simulations

H Miyamoto, M Umemura, T Aoyagi, C Yamane… - Carbohydrate …, 2009 - Elsevier
We investigated structural reorganization of two different kinds of molecular sheets derived
from the cellulose II crystal using molecular dynamics (MD) simulations, in order to identify …

Extraction and application of extracellular polymeric substances from fungi

S Wu, H Huo, Y Shi, F Zhang, T Gu, Z Li - Advances in Applied Microbiology, 2023 - Elsevier
Extracellular polymeric substances (EPS) are extracellular metabolites of microorganisms,
highly associated with microbial function, adaptation, and growth. The main compounds in …

Molecular simulations of dodecyl-β-maltoside micelles in water: influence of the headgroup conformation and force field parameters

S Abel, FY Dupradeau, EP Raman… - The Journal of …, 2011 - ACS Publications
This paper deals with the development and validation of new potential parameter sets,
based on the CHARMM36 and GLYCAM06 force fields, to simulate micelles of the two …

Intramolecular hydrogen-bonding in aqueous carbohydrates as a cause or consequence of conformational preferences: a molecular dynamics study of cellobiose …

D Wang, ML Ámundadóttir, WF van Gunsteren… - European biophysics …, 2013 - Springer
It is often assumed that intramolecular hydrogen-bonding (H-bonding) exerts a significant
influence on the conformational properties of aqueous (bio-) polymers. To discuss this …

Structural evidence for inter-residue hydrogen bonding observed for cellobiose in aqueous solution

WB O'Dell, DC Baker, SE McLain - 2012 - journals.plos.org
The structure of the disaccharide cellulose subunit cellobiose (4-O-β-D-glucopyranosyl-D-
glucose) in solution has been determined via neutron diffraction with isotopic substitution …

[HTML][HTML] Density, viscosity, and refractive index of mono-, di-, and tri-saccharides in aqueous glycine solutions at different temperatures

A Ali, P Bidhuri, NA Malik, S Uzair - Arabian Journal of Chemistry, 2019 - Elsevier
Abstract Density, ρ, viscosity, η, and refractive index, n D of glucose, sucrose, and raffinose
have been measured in 0.015 m aqueous glycine at 298.15, 303.15, 308.15, and 313.15 K …