GLYCAM06: a generalizable biomolecular force field. Carbohydrates
KN Kirschner, AB Yongye… - Journal of …, 2008 - Wiley Online Library
A new derivation of the GLYCAM06 force field, which removes its previous specificity for
carbohydrates, and its dependency on the AMBER force field and parameters, is presented …
carbohydrates, and its dependency on the AMBER force field and parameters, is presented …
The role of hydrogen bonding in non-ionic polymer adsorption to cellulose nanocrystals and silica colloids
MS Reid, M Villalobos, ED Cranston - Current Opinion in Colloid & Interface …, 2017 - Elsevier
A piqued interest in nanocellulose has recently arisen due to the growing need to use
sustainable and renewable materials in place of those that are derived from petrochemical …
sustainable and renewable materials in place of those that are derived from petrochemical …
Can the protein/carbohydrate (P/C) ratio of exopolymeric substances (EPS) be used as a proxy for their 'stickiness' and aggregation propensity?
Microbially secreted exopolymeric substances (EPS), rich in polysaccharides and proteins,
make up an important part of natural organic matter in the ocean, especially marine snow …
make up an important part of natural organic matter in the ocean, especially marine snow …
Conformational properties of glucose-based disaccharides investigated using molecular dynamics simulations with local elevation umbrella sampling
L Perić-Hassler, HS Hansen, R Baron… - Carbohydrate …, 2010 - Elsevier
Explicit-solvent molecular dynamics (MD) simulations of the 11 glucose-based
disaccharides in water at 300K and 1bar are reported. The simulations were carried out with …
disaccharides in water at 300K and 1bar are reported. The simulations were carried out with …
Structural reorganization of molecular sheets derived from cellulose II by molecular dynamics simulations
We investigated structural reorganization of two different kinds of molecular sheets derived
from the cellulose II crystal using molecular dynamics (MD) simulations, in order to identify …
from the cellulose II crystal using molecular dynamics (MD) simulations, in order to identify …
Extraction and application of extracellular polymeric substances from fungi
S Wu, H Huo, Y Shi, F Zhang, T Gu, Z Li - Advances in Applied Microbiology, 2023 - Elsevier
Extracellular polymeric substances (EPS) are extracellular metabolites of microorganisms,
highly associated with microbial function, adaptation, and growth. The main compounds in …
highly associated with microbial function, adaptation, and growth. The main compounds in …
Molecular simulations of dodecyl-β-maltoside micelles in water: influence of the headgroup conformation and force field parameters
S Abel, FY Dupradeau, EP Raman… - The Journal of …, 2011 - ACS Publications
This paper deals with the development and validation of new potential parameter sets,
based on the CHARMM36 and GLYCAM06 force fields, to simulate micelles of the two …
based on the CHARMM36 and GLYCAM06 force fields, to simulate micelles of the two …
Intramolecular hydrogen-bonding in aqueous carbohydrates as a cause or consequence of conformational preferences: a molecular dynamics study of cellobiose …
D Wang, ML Ámundadóttir, WF van Gunsteren… - European biophysics …, 2013 - Springer
It is often assumed that intramolecular hydrogen-bonding (H-bonding) exerts a significant
influence on the conformational properties of aqueous (bio-) polymers. To discuss this …
influence on the conformational properties of aqueous (bio-) polymers. To discuss this …
Structural evidence for inter-residue hydrogen bonding observed for cellobiose in aqueous solution
The structure of the disaccharide cellulose subunit cellobiose (4-O-β-D-glucopyranosyl-D-
glucose) in solution has been determined via neutron diffraction with isotopic substitution …
glucose) in solution has been determined via neutron diffraction with isotopic substitution …
[HTML][HTML] Density, viscosity, and refractive index of mono-, di-, and tri-saccharides in aqueous glycine solutions at different temperatures
Abstract Density, ρ, viscosity, η, and refractive index, n D of glucose, sucrose, and raffinose
have been measured in 0.015 m aqueous glycine at 298.15, 303.15, 308.15, and 313.15 K …
have been measured in 0.015 m aqueous glycine at 298.15, 303.15, 308.15, and 313.15 K …