Counting and enumerating tree-child networks and their subclasses
Galled trees are studied as a recombination model in population genetics. This class of
phylogenetic networks is generalized into tree-child and galled network classes by relaxing …
phylogenetic networks is generalized into tree-child and galled network classes by relaxing …
Combinatorial characterization of a certain class of words and a conjectured connection with general subclasses of phylogenetic tree-child networks
M Pons, J Batle - Scientific reports, 2021 - nature.com
The combinatorial study of phylogenetic networks has attracted much attention in recent
times. In particular, one class of them, the so-called tree-child networks, are becoming the …
times. In particular, one class of them, the so-called tree-child networks, are becoming the …
Embedding phylogenetic trees in networks of low treewidth
Given a rooted, binary phylogenetic network and a rooted, binary phylogenetic tree, can the
tree be embedded into the network? This problem, called TREE CONTAINMENT, arises …
tree be embedded into the network? This problem, called TREE CONTAINMENT, arises …
Generating normal networks via leaf insertion and nearest neighbor interchange
L Zhang - BMC bioinformatics, 2019 - Springer
Background Galled trees are studied as a recombination model in theoretical population
genetics. This class of phylogenetic networks has been generalized to tree-child networks …
genetics. This class of phylogenetic networks has been generalized to tree-child networks …
[HTML][HTML] Counting and enumerating galled networks
Galled trees are widely studied as a recombination model in population genetics. This class
of phylogenetic networks is generalized into galled networks by relaxing a structural …
of phylogenetic networks is generalized into galled networks by relaxing a structural …
Counting phylogenetic networks with few reticulation vertices: galled and reticulation-visible networks
YS Chang, M Fuchs - Bulletin of Mathematical Biology, 2024 - Springer
We give exact and asymptotic counting results for the number of galled networks and
reticulation-visible networks with few reticulation vertices. Our results are obtained with the …
reticulation-visible networks with few reticulation vertices. Our results are obtained with the …
On The Exact Counting of Tree-Child Networks
M Pons, J Batle - 2021 - researchsquare.com
The combinatorial study of phylogenetic networks has attracted much attention in recent
times. In particular, one class of them, the so-called tree-child networks, are becoming the …
times. In particular, one class of them, the so-called tree-child networks, are becoming the …
Recent Progresses in the Combinatorial and Algorithmic Study of Rooted Phylogenetic Networks
L Zhang - … , WALCOM 2020, Singapore, Singapore, March 31 …, 2020 - Springer
Galled trees are studied as a recombination model in theoretical population genetics. Tree-
child networks, reticulation-visible networks and tree-based networks can be considered as …
child networks, reticulation-visible networks and tree-based networks can be considered as …