Biological sequence classification: A review on data and general methods
C Ao, S Jiao, Y Wang, L Yu, Q Zou - Research, 2022 - spj.science.org
With the rapid development of biotechnology, the number of biological sequences has
grown exponentially. The continuous expansion of biological sequence data promotes the …
grown exponentially. The continuous expansion of biological sequence data promotes the …
[HTML][HTML] AI applications in functional genomics
We review the current applications of artificial intelligence (AI) in functional genomics. The
recent explosion of AI follows the remarkable achievements made possible by “deep …
recent explosion of AI follows the remarkable achievements made possible by “deep …
AcrPred: A hybrid optimization with enumerated machine learning algorithm to predict Anti-CRISPR proteins
CRISPR-Cas, as a tool for gene editing, has received extensive attention in recent years.
Anti-CRISPR (Acr) proteins can inactivate the CRISPR-Cas defense system during …
Anti-CRISPR (Acr) proteins can inactivate the CRISPR-Cas defense system during …
Anticancer peptides prediction with deep representation learning features
Anticancer peptides constitute one of the most promising therapeutic agents for combating
common human cancers. Using wet experiments to verify whether a peptide displays …
common human cancers. Using wet experiments to verify whether a peptide displays …
Attention-based multi-label neural networks for integrated prediction and interpretation of twelve widely occurring RNA modifications
Recent studies suggest that epi-transcriptome regulation via post-transcriptional RNA
modifications is vital for all RNA types. Precise identification of RNA modification sites is …
modifications is vital for all RNA types. Precise identification of RNA modification sites is …
Computational prediction and interpretation of cell-specific replication origin sites from multiple eukaryotes by exploiting stacking framework
Origins of replication sites (ORIs), which refers to the initiative locations of genomic DNA
replication, play essential roles in DNA replication process. Detection of ORIs' distribution in …
replication, play essential roles in DNA replication process. Detection of ORIs' distribution in …
iRNA-ac4C: a novel computational method for effectively detecting N4-acetylcytidine sites in human mRNA
W Su, XQ Xie, XW Liu, D Gao, CY Ma, H Zulfiqar… - International Journal of …, 2023 - Elsevier
Abstract RNA N4-acetylcytidine (ac4C) is the acetylation of cytidine at the nitrogen-4
position, which is a highly conserved RNA modification and involves a variety of biological …
position, which is a highly conserved RNA modification and involves a variety of biological …
Predicting RNA 5‐Methylcytosine Sites by Using Essential Sequence Features and Distributions
Methylation is one of the most common and considerable modifications in biological systems
mediated by multiple enzymes. Recent studies have shown that methylation has been …
mediated by multiple enzymes. Recent studies have shown that methylation has been …
Identification of sub-Golgi protein localization by use of deep representation learning features
Abstract Motivation The Golgi apparatus has a key functional role in protein biosynthesis
within the eukaryotic cell with malfunction resulting in various neurodegenerative diseases …
within the eukaryotic cell with malfunction resulting in various neurodegenerative diseases …
[HTML][HTML] Identification of cyclin protein using gradient boost decision tree algorithm
H Zulfiqar, SS Yuan, QL Huang, ZJ Sun, FY Dao… - Computational and …, 2021 - Elsevier
Cyclin proteins are capable to regulate the cell cycle by forming a complex with cyclin-
dependent kinases to activate cell cycle. Correct recognition of cyclin proteins could provide …
dependent kinases to activate cell cycle. Correct recognition of cyclin proteins could provide …