Single-cell and spatial transcriptomics: deciphering brain complexity in health and disease

M Piwecka, N Rajewsky, A Rybak-Wolf - Nature Reviews Neurology, 2023 - nature.com
In the past decade, single-cell technologies have proliferated and improved from their
technically challenging beginnings to become common laboratory methods capable of …

Single-cell transcriptomics for the assessment of cardiac disease

AMA Miranda, V Janbandhu, H Maatz… - Nature Reviews …, 2023 - nature.com
Cardiovascular disease is the leading cause of death globally. An advanced understanding
of cardiovascular disease mechanisms is required to improve therapeutic strategies and …

Pathogenic variants damage cell composition and single cell transcription in cardiomyopathies

D Reichart, EL Lindberg, H Maatz, AMA Miranda… - Science, 2022 - science.org
Pathogenic variants in genes that cause dilated cardiomyopathy (DCM) and arrhythmogenic
cardiomyopathy (ACM) convey high risks for the development of heart failure through …

Functional dissection of human cardiac enhancers and noncoding de novo variants in congenital heart disease

F Xiao, X Zhang, SU Morton, SW Kim, Y Fan… - Nature Genetics, 2024 - nature.com
Rare coding mutations cause∼ 45% of congenital heart disease (CHD). Noncoding
mutations that perturb cis-regulatory elements (CREs) likely contribute to the remaining …

Opportunities and challenges in the application of single-cell and spatial transcriptomics in plants

C Chen, Y Ge, L Lu - Frontiers in Plant Science, 2023 - frontiersin.org
Single-cell and spatial transcriptomics have diverted researchers' attention from the
multicellular level to the single-cell level and spatial information. Single-cell transcriptomes …

Pathogenesis of Cardiomyopathy Caused by Variants in ALPK3, an Essential Pseudokinase in the Cardiomyocyte Nucleus and Sarcomere

R Agarwal, H Wakimoto, JA Paulo, Q Zhang… - Circulation, 2022 - Am Heart Assoc
Background: ALPK3 encodes α-kinase 3, a muscle-specific protein of unknown function.
ALPK3 loss-of-function variants cause cardiomyopathy with distinctive clinical …

Ablation of lysophosphatidic acid receptor 1 attenuates hypertrophic cardiomyopathy in a mouse model

A Axelsson Raja, H Wakimoto… - Proceedings of the …, 2022 - National Acad Sciences
Myocardial fibrosis is a key pathologic feature of hypertrophic cardiomyopathy (HCM).
However, the fibrotic pathways activated by HCM-causing sarcomere protein gene …

CMYA5 establishes cardiac dyad architecture and positioning

F Lu, Q Ma, W Xie, CL Liou, D Zhang, ME Sweat… - Nature …, 2022 - nature.com
Cardiac excitation-contraction coupling requires dyads, the nanoscopic microdomains
formed adjacent to Z-lines by apposition of transverse tubules and junctional sarcoplasmic …

Hypertrophic cardiomyopathy–associated mutations drive stromal activation via EGFR-mediated paracrine signaling

JK Ewoldt, MC Wang, MA McLellan, PE Cloonan… - Science …, 2024 - science.org
Hypertrophic cardiomyopathy (HCM) is characterized by thickening of the left ventricular
wall, diastolic dysfunction, and fibrosis, and is associated with mutations in genes encoding …

Single nucleus RNA-sequencing: how it's done, applications and limitations

J Fischer, T Ayers - Emerging Topics in Life Sciences, 2021 - portlandpress.com
Single nuclei RNA-sequencing (sNuc-Seq) is a methodology which uses isolated nuclei
instead of whole cells to profile gene expression. By using droplet microfluidic technologies …