[HTML][HTML] Tools and methods for circular dichroism spectroscopy of proteins: a tutorial review
AJ Miles, RW Janes, BA Wallace - Chemical Society Reviews, 2021 - pubs.rsc.org
Circular dichroism (CD) spectroscopy is a widely-used method in biochemistry, structural
biology and pharmaceutical chemistry. More than 24 000 papers published in the past …
biology and pharmaceutical chemistry. More than 24 000 papers published in the past …
[HTML][HTML] Quantum machine learning for chemistry and physics
Machine learning (ML) has emerged as a formidable force for identifying hidden but
pertinent patterns within a given data set with the objective of subsequent generation of …
pertinent patterns within a given data set with the objective of subsequent generation of …
Pfam: The protein families database in 2021
J Mistry, S Chuguransky, L Williams… - Nucleic acids …, 2021 - academic.oup.com
The Pfam database is a widely used resource for classifying protein sequences into families
and domains. Since Pfam was last described in this journal, over 350 new families have …
and domains. Since Pfam was last described in this journal, over 350 new families have …
DichroWeb, a website for calculating protein secondary structure from circular dichroism spectroscopic data
AJ Miles, SG Ramalli, BA Wallace - Protein Science, 2022 - Wiley Online Library
Circular dichroism (CD) spectroscopy is a widely‐used method for characterizing the
secondary structures of proteins. The well‐established and highly used analysis website …
secondary structures of proteins. The well‐established and highly used analysis website …
[HTML][HTML] Protein remote homology detection and structural alignment using deep learning
Exploiting sequence–structure–function relationships in biotechnology requires improved
methods for aligning proteins that have low sequence similarity to previously annotated …
methods for aligning proteins that have low sequence similarity to previously annotated …
EMPIAR: the electron microscopy public image archive
A Iudin, PK Korir, S Somasundharam… - Nucleic Acids …, 2023 - academic.oup.com
Public archiving in structural biology is well established with the Protein Data Bank (PDB;
wwPDB. org) catering for atomic models and the Electron Microscopy Data Bank (EMDB; …
wwPDB. org) catering for atomic models and the Electron Microscopy Data Bank (EMDB; …
The Pfam protein families database in 2019
The last few years have witnessed significant changes in Pfam (https://pfam. xfam. org). The
number of families has grown substantially to a total of 17,929 in release 32.0. New …
number of families has grown substantially to a total of 17,929 in release 32.0. New …
PDBsum: Structural summaries of PDB entries
PDBsum is a web server providing structural information on the entries in the Protein Data
Bank (PDB). The analyses are primarily image‐based and include protein secondary …
Bank (PDB). The analyses are primarily image‐based and include protein secondary …
The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition
Abstract The ProteomeXchange (PX) Consortium of proteomics resources (http://www.
proteomexchange. org) was formally started in 2011 to standardize data submission and …
proteomexchange. org) was formally started in 2011 to standardize data submission and …
[HTML][HTML] Database resources of the national center for biotechnology information
NR Coordinators - Nucleic acids research, 2016 - ncbi.nlm.nih.gov
Abstract The National Center for Biotechnology Information (NCBI) provides a large suite of
online resources for biological information and data, including the GenBank® nucleic acid …
online resources for biological information and data, including the GenBank® nucleic acid …