The catalytic diversity of RNAs
MJ Fedor, JR Williamson - Nature reviews Molecular cell biology, 2005 - nature.com
The natural RNA enzymes catalyse phosphate-group transfer and peptide-bond formation.
Initially, metal ions were proposed to supply the chemical versatility that nucleotides lack. In …
Initially, metal ions were proposed to supply the chemical versatility that nucleotides lack. In …
Generation of 2′, 3′-cyclic phosphate-containing RNAs as a hidden layer of the transcriptome
M Shigematsu, T Kawamura, Y Kirino - Frontiers in genetics, 2018 - frontiersin.org
Cellular RNA molecules contain phosphate or hydroxyl ends. A 2′, 3′-cyclic phosphate
(cP) is one of the 3′-terminal forms of RNAs mainly generated from RNA cleavage by …
(cP) is one of the 3′-terminal forms of RNAs mainly generated from RNA cleavage by …
A conformational switch controls hepatitis delta virus ribozyme catalysis
Ribozymes enhance chemical reaction rates using many of the same catalytic strategies as
protein enzymes. In the hepatitis delta virus (HDV) ribozyme, site-specific self-cleavage of …
protein enzymes. In the hepatitis delta virus (HDV) ribozyme, site-specific self-cleavage of …
Novel ribozymes: discovery, catalytic mechanisms, and the quest to understand biological function
CE Weinberg, Z Weinberg… - Nucleic acids research, 2019 - academic.oup.com
Small endonucleolytic ribozymes promote the self-cleavage of their own phosphodiester
backbone at a specific linkage. The structures of and the reactions catalysed by members of …
backbone at a specific linkage. The structures of and the reactions catalysed by members of …
Click chemistry for rapid labeling and ligation of RNA
The copper (I)‐promoted azide–alkyne cycloaddition reaction (click chemistry) is shown to
be compatible with RNA (with free 2′‐hydroxyl groups) in spite of the intrinsic lability of …
be compatible with RNA (with free 2′‐hydroxyl groups) in spite of the intrinsic lability of …
General acid catalysis by the hepatitis delta virus ribozyme
SR Das, JA Piccirilli - Nature Chemical Biology, 2005 - nature.com
Recent crystallographic and functional analyses of RNA enzymes have raised the possibility
that the purine and pyrimidine nucleobases may function as general acid-base catalysts …
that the purine and pyrimidine nucleobases may function as general acid-base catalysts …
Crystallization of RNA and RNA–protein complexes
RNA plays a direct role in a variety of cellular activities, and in many cases its biological
function is conferred by the RNA three-dimensional structure. X-ray crystallography is the …
function is conferred by the RNA three-dimensional structure. X-ray crystallography is the …
[图书][B] From enzyme models to model enzymes
AJ Kirby, F Hollfelder - 2009 - books.google.com
Designing artificial systems with catalytic efficiencies to rival those of natural enzymes is one
of the great challenges facing science today. Our current level of understanding fails the …
of the great challenges facing science today. Our current level of understanding fails the …
How RNA unfolds and refolds
PTX Li, J Vieregg, I Tinoco Jr - Annu. Rev. Biochem., 2008 - annualreviews.org
Understanding how RNA folds and what causes it to unfold has become more important as
knowledge of the diverse functions of RNA has increased. Here we review the contributions …
knowledge of the diverse functions of RNA has increased. Here we review the contributions …
Force Field for Mg2+, Mn2+, Zn2+, and Cd2+ Ions That Have Balanced Interactions with Nucleic Acids
MT Panteva, GM Giambasu… - The Journal of Physical …, 2015 - ACS Publications
Divalent metal ions are of fundamental importance to the function and folding of nucleic
acids. Divalent metal ion–nucleic acid interactions are complex in nature and include both …
acids. Divalent metal ion–nucleic acid interactions are complex in nature and include both …