Protein secondary structure prediction using neural networks and deep learning: A review

W Wardah, MGM Khan, A Sharma… - Computational biology and …, 2019 - Elsevier
Literature contains over fifty years of accumulated methods proposed by researchers for
predicting the secondary structures of proteins in silico. A large part of this collection is …

JPred4: a protein secondary structure prediction server

A Drozdetskiy, C Cole, J Procter… - Nucleic acids …, 2015 - academic.oup.com
Abstract JPred4 (http://www. compbio. dundee. ac. uk/jpred4) is the latest version of the
popular JPred protein secondary structure prediction server which provides predictions by …

Protein secondary structure prediction: a review of progress and directions

T Smolarczyk, I Roterman-Konieczna… - Current …, 2020 - ingentaconnect.com
Background: Over the last few decades, a search for the theory of protein folding has grown
into a full-fledged research field at the intersection of biology, chemistry and informatics …

Sixty-five years of the long march in protein secondary structure prediction: the final stretch?

Y Yang, J Gao, J Wang, R Heffernan… - Briefings in …, 2018 - academic.oup.com
Protein secondary structure prediction began in 1951 when Pauling and Corey predicted
helical and sheet conformations for protein polypeptide backbone even before the first …

A Deep Learning Network Approach to ab initio Protein Secondary Structure Prediction

M Spencer, J Eickholt, J Cheng - IEEE/ACM transactions on …, 2014 - ieeexplore.ieee.org
Ab initio protein secondary structure (SS) predictions are utilized to generate tertiary
structure predictions, which are increasingly demanded due to the rapid discovery of …

[HTML][HTML] A generic method for assignment of reliability scores applied to solvent accessibility predictions

B Petersen, TN Petersen, P Andersen, M Nielsen… - BMC structural …, 2009 - Springer
Background Estimation of the reliability of specific real value predictions is nontrivial and the
efficacy of this is often questionable. It is important to know if you can trust a given prediction …

MUFOLD‐SS: new deep inception‐inside‐inception networks for protein secondary structure prediction

C Fang, Y Shang, D Xu - Proteins: Structure, Function, and …, 2018 - Wiley Online Library
Protein secondary structure prediction can provide important information for protein 3D
structure prediction and protein functions. Deep learning offers a new opportunity to …

Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties …

Y Yang, E Faraggi, H Zhao, Y Zhou - Bioinformatics, 2011 - academic.oup.com
Motivation: In recent years, development of a single-method fold-recognition server lags
behind consensus and multiple template techniques. However, a good consensus …

SPINE X: improving protein secondary structure prediction by multistep learning coupled with prediction of solvent accessible surface area and backbone torsion …

E Faraggi, T Zhang, Y Yang, L Kurgan… - Journal of …, 2012 - Wiley Online Library
Accurate prediction of protein secondary structure is essential for accurate sequence
alignment, three‐dimensional structure modeling, and function prediction. The accuracy of …

[PDF][PDF] CFSSP: Chou and Fasman secondary structure prediction server

TA Kumar - Wide Spectrum, 2013 - researchgate.net
ABSTRACT CFSSP (Chou & Fasman Secondary Structure Prediction Server) is an online
protein secondary structure prediction server. This server predicts regions of secondary …