[HTML][HTML] MDSC: Markers, development, states, and unaddressed complexity

S Hegde, AM Leader, M Merad - Immunity, 2021 - cell.com
Myeloid-derived suppressor cells (MDSCs) are one of the most discussed biological entities
in immunology. While the context and classification of this group of cells has evolved …

Integrating genetic and non-genetic determinants of cancer evolution by single-cell multi-omics

AS Nam, R Chaligne, DA Landau - Nature Reviews Genetics, 2021 - nature.com
Cancer represents an evolutionary process through which growing malignant populations
genetically diversify, leading to tumour progression, relapse and resistance to therapy. In …

Single-cell chromatin state analysis with Signac

T Stuart, A Srivastava, S Madad, CA Lareau, R Satija - Nature methods, 2021 - nature.com
The recent development of experimental methods for measuring chromatin state at single-
cell resolution has created a need for computational tools capable of analyzing these …

Lineage tracing meets single-cell omics: opportunities and challenges

DE Wagner, AM Klein - Nature Reviews Genetics, 2020 - nature.com
A fundamental goal of developmental and stem cell biology is to map the developmental
history (ontogeny) of differentiated cell types. Recent advances in high-throughput single …

Single-cell multi-omics of mitochondrial DNA disorders reveals dynamics of purifying selection across human immune cells

CA Lareau, SM Dubois, FA Buquicchio, YH Hsieh… - Nature …, 2023 - nature.com
Pathogenic mutations in mitochondrial DNA (mtDNA) compromise cellular metabolism,
contributing to cellular heterogeneity and disease. Diverse mutations are associated with …

Applying high-dimensional single-cell technologies to the analysis of cancer immunotherapy

SH Gohil, JB Iorgulescu, DA Braun, DB Keskin… - Nature Reviews …, 2021 - nature.com
Advances in molecular biology, microfluidics and bioinformatics have empowered the study
of thousands or even millions of individual cells from malignant tumours at the single-cell …

Massively parallel single-cell mitochondrial DNA genotyping and chromatin profiling

CA Lareau, LS Ludwig, C Muus, SH Gohil, T Zhao… - Nature …, 2021 - nature.com
Natural mitochondrial DNA (mtDNA) mutations enable the inference of clonal relationships
among cells. mtDNA can be profiled along with measures of cell state, but has not yet been …

[HTML][HTML] Deciphering cell states and genealogies of human haematopoiesis

C Weng, F Yu, D Yang, M Poeschla, LA Liggett… - Nature, 2024 - nature.com
The human blood system is maintained through the differentiation and massive amplification
of a limited number of long-lived haematopoietic stem cells (HSCs). Perturbations to this …

Mitochondrial genetics through the lens of single-cell multi-omics

L Nitsch, CA Lareau, LS Ludwig - Nature genetics, 2024 - nature.com
Mitochondria carry their own genetic information encoding for a subset of protein-coding
genes and translational machinery essential for cellular respiration and metabolism. Despite …

Single-cell RNA sequencing in cardiovascular development, disease and medicine

DT Paik, S Cho, L Tian, HY Chang… - Nature Reviews Cardiology, 2020 - nature.com
Advances in single-cell RNA sequencing (scRNA-seq) technologies in the past 10 years
have had a transformative effect on biomedical research, enabling the profiling and analysis …