A genome catalogue of lake bacterial diversity and its drivers at continental scale

RE Garner, SA Kraemer, VE Onana, M Fradette… - Nature …, 2023 - nature.com
Lakes are heterogeneous ecosystems inhabited by a rich microbiome whose genomic
diversity is poorly defined. We present a continental-scale study of metagenomes …

Water pollution and the assessment of water quality parameters: a review

NA Misman, MF Sharif, AJK Chowdhury… - Desalination and Water …, 2023 - Elsevier
The entry of pollutants into the water bodies has deteriorated the quality of freshwater which
led to the occurrence of water pollution. The factors of water pollution due to natural …

Species-specific responses of marine bacteria to environmental perturbation

TD Peña-Montenegro, S Kleindienst… - ISME …, 2023 - academic.oup.com
Environmental perturbations shape the structure and function of microbial communities. Oil
spills are a major perturbation and resolving spills often requires active measures like …

Human access and deterministic processes play a major role in structuring planktonic and sedimentary bacterial and eukaryotic communities in lakes

JK Pearman, G Thomson-Laing, L Thompson, S Waters… - PeerJ, 2022 - peerj.com
Lakes provide habitat for a diverse array of species and offer a wide range of ecosystem
services for humanity. However, they are highly vulnerable as they are not only impacted by …

FreshOmics: a manually curated and standardized–omics database for investigating freshwater microbiomes

C Biderre‐Petit, JC Charvy, G Bronner… - Molecular Ecology …, 2023 - Wiley Online Library
Freshwater is a critical resource for human survival but severely threatened by
anthropogenic activities and climate change. These changes strongly impact the abundance …

Selection and enrichment of microbial species with an increased lignocellulolytic phenotype from a native soil microbiome by activity-based probing

NJ Reichart, AK Steiger, EM Van Fossen… - ISME …, 2023 - academic.oup.com
Multi-omic analyses can provide information on the potential for activity within a microbial
community but often lack specificity to link functions to cell, primarily offer potential for …

Diversity and Their Response to Environmental Factors of Prokaryotic Ultraplankton in Spring and Summer of Cihu Lake and Xiandao Lake in China

C Lan, L Sun, Y Hu, Y Zhang, J Xu, H Ding, R Tang… - Sustainability, 2023 - mdpi.com
Ultraplankton plays an important role in the biogeochemical cycles of aquatic ecosystems.
Based on 16S rRNA gene sequencing technology, the community structure composition of …

Niche formation and metabolic interactions result in stable diversity in a spatially structured cyanobacterial community

SJN Duxbury, S Raguideau, K Cremin, J Rosko… - bioRxiv, 2022 - biorxiv.org
Understanding how microbial communities maintain stable compositional diversity is key for
predicting community function. Studies from species pairwise interactions and synthetic …

Structure and Metabolic Potential of the Microbiome of Lake Baikal Upper Sediment Layers Determined by Metagenome Analysis

SV Bukin, AV Lomakina, II Rusanov, VG Ivanov… - Microbiology, 2023 - Springer
This is the first report on the application of metagenomic analysis of the microbiome of Lake
Baikal bottom sediments in order to assess the community structure and metabolic potential …

A genome catalogue of lake bacteria across watershed land use gradients at a continental scale

RE Garner, SA Kraemer, VE Onana, M Fradette… - bioRxiv, 2022 - biorxiv.org
Lakes are highly heterogenous ecosystems inhabited by a rich microbiome whose genomic
diversity remains poorly defined compared to other major biomes. Here, we present a …