A code within the genetic code: codon usage regulates co-translational protein folding
Y Liu - Cell Communication and Signaling, 2020 - Springer
The genetic code is degenerate, and most amino acids are encoded by two to six
synonymous codons. Codon usage bias, the preference for certain synonymous codons, is a …
synonymous codons. Codon usage bias, the preference for certain synonymous codons, is a …
Chloroplast translation: structural and functional organization, operational control, and regulation
R Zoschke, R Bock - The Plant Cell, 2018 - academic.oup.com
Chloroplast translation is essential for cellular viability and plant development. Its positioning
at the intersection of organellar RNA and protein metabolism makes it a unique point for the …
at the intersection of organellar RNA and protein metabolism makes it a unique point for the …
Codon usage influences the local rate of translation elongation to regulate co-translational protein folding
Codon usage bias is a universal feature of eukaryotic and prokaryotic genomes and has
been proposed to regulate translation efficiency, accuracy, and protein folding based on the …
been proposed to regulate translation efficiency, accuracy, and protein folding based on the …
Mitochondrial translation requires folate-dependent tRNA methylation
Folates enable the activation and transfer of one-carbon units for the biosynthesis of purines,
thymidine and methionine,,. Antifolates are important immunosuppressive and anticancer …
thymidine and methionine,,. Antifolates are important immunosuppressive and anticancer …
A systematically-revised ribosome profiling method for bacteria reveals pauses at single-codon resolution
In eukaryotes, ribosome profiling provides insight into the mechanism of protein synthesis at
the codon level. In bacteria, however, the method has been more problematic and no …
the codon level. In bacteria, however, the method has been more problematic and no …
Synonymous codon substitutions perturb cotranslational protein folding in vivo and impair cell fitness
IM Walsh, MA Bowman… - Proceedings of the …, 2020 - National Acad Sciences
In the cell, proteins are synthesized from N to C terminus and begin to fold during translation.
Cotranslational folding mechanisms are therefore linked to elongation rate, which varies as …
Cotranslational folding mechanisms are therefore linked to elongation rate, which varies as …
Ribosome pausing, arrest and rescue in bacteria and eukaryotes
AR Buskirk, R Green - … of the Royal Society B: Biological …, 2017 - royalsocietypublishing.org
Ribosomes translate genetic information into polypeptides in several basic steps: initiation,
elongation, termination and recycling. When ribosomes are arrested during elongation or …
elongation, termination and recycling. When ribosomes are arrested during elongation or …
Clarifying the translational pausing landscape in bacteria by ribosome profiling
F Mohammad, CJ Woolstenhulme, R Green… - Cell reports, 2016 - cell.com
The rate of protein synthesis varies according to the mRNA sequence in ways that affect
gene expression. Global analysis of translational pausing is now possible with ribosome …
gene expression. Global analysis of translational pausing is now possible with ribosome …
Context-specific inhibition of translation by ribosomal antibiotics targeting the peptidyl transferase center
The first broad-spectrum antibiotic chloramphenicol and one of the newest clinically
important antibacterials, linezolid, inhibit protein synthesis by targeting the peptidyl …
important antibacterials, linezolid, inhibit protein synthesis by targeting the peptidyl …
Codon usage regulates protein structure and function by affecting translation elongation speed in Drosophila cells
Codon usage biases are found in all eukaryotic and prokaryotic genomes and have been
proposed to regulate different aspects of translation process. Codon optimality has been …
proposed to regulate different aspects of translation process. Codon optimality has been …