A code within the genetic code: codon usage regulates co-translational protein folding

Y Liu - Cell Communication and Signaling, 2020 - Springer
The genetic code is degenerate, and most amino acids are encoded by two to six
synonymous codons. Codon usage bias, the preference for certain synonymous codons, is a …

Chloroplast translation: structural and functional organization, operational control, and regulation

R Zoschke, R Bock - The Plant Cell, 2018 - academic.oup.com
Chloroplast translation is essential for cellular viability and plant development. Its positioning
at the intersection of organellar RNA and protein metabolism makes it a unique point for the …

Codon usage influences the local rate of translation elongation to regulate co-translational protein folding

CH Yu, Y Dang, Z Zhou, C Wu, F Zhao, MS Sachs… - Molecular cell, 2015 - cell.com
Codon usage bias is a universal feature of eukaryotic and prokaryotic genomes and has
been proposed to regulate translation efficiency, accuracy, and protein folding based on the …

Mitochondrial translation requires folate-dependent tRNA methylation

RJ Morscher, GS Ducker, SHJ Li, JA Mayer, Z Gitai… - Nature, 2018 - nature.com
Folates enable the activation and transfer of one-carbon units for the biosynthesis of purines,
thymidine and methionine,,. Antifolates are important immunosuppressive and anticancer …

A systematically-revised ribosome profiling method for bacteria reveals pauses at single-codon resolution

F Mohammad, R Green, AR Buskirk - Elife, 2019 - elifesciences.org
In eukaryotes, ribosome profiling provides insight into the mechanism of protein synthesis at
the codon level. In bacteria, however, the method has been more problematic and no …

Synonymous codon substitutions perturb cotranslational protein folding in vivo and impair cell fitness

IM Walsh, MA Bowman… - Proceedings of the …, 2020 - National Acad Sciences
In the cell, proteins are synthesized from N to C terminus and begin to fold during translation.
Cotranslational folding mechanisms are therefore linked to elongation rate, which varies as …

Ribosome pausing, arrest and rescue in bacteria and eukaryotes

AR Buskirk, R Green - … of the Royal Society B: Biological …, 2017 - royalsocietypublishing.org
Ribosomes translate genetic information into polypeptides in several basic steps: initiation,
elongation, termination and recycling. When ribosomes are arrested during elongation or …

Clarifying the translational pausing landscape in bacteria by ribosome profiling

F Mohammad, CJ Woolstenhulme, R Green… - Cell reports, 2016 - cell.com
The rate of protein synthesis varies according to the mRNA sequence in ways that affect
gene expression. Global analysis of translational pausing is now possible with ribosome …

Context-specific inhibition of translation by ribosomal antibiotics targeting the peptidyl transferase center

J Marks, K Kannan, EJ Roncase… - Proceedings of the …, 2016 - National Acad Sciences
The first broad-spectrum antibiotic chloramphenicol and one of the newest clinically
important antibacterials, linezolid, inhibit protein synthesis by targeting the peptidyl …

Codon usage regulates protein structure and function by affecting translation elongation speed in Drosophila cells

F Zhao, C Yu, Y Liu - Nucleic acids research, 2017 - academic.oup.com
Codon usage biases are found in all eukaryotic and prokaryotic genomes and have been
proposed to regulate different aspects of translation process. Codon optimality has been …