[HTML][HTML] Metabolomics and its applications in cancer cachexia
P Cui, X Li, C Huang, Q Li, D Lin - Frontiers in molecular biosciences, 2022 - frontiersin.org
Cancer cachexia (CC) is a complicated metabolic derangement and muscle wasting
syndrome, affecting 50–80% cancer patients. So far, molecular mechanisms underlying CC …
syndrome, affecting 50–80% cancer patients. So far, molecular mechanisms underlying CC …
[HTML][HTML] Clinically relevant post-translational modification analyses—maturing workflows and bioinformatics tools
Post-translational modifications (PTMs) can occur soon after translation or at any stage in
the lifecycle of a given protein, and they may help regulate protein folding, stability, cellular …
the lifecycle of a given protein, and they may help regulate protein folding, stability, cellular …
[HTML][HTML] MSstatsPTM: statistical relative quantification of posttranslational modifications in bottom-up mass spectrometry-based proteomics
Liquid chromatography coupled with bottom-up mass spectrometry (LC-MS/MS)–based
proteomics is increasingly used to detect changes in posttranslational modifications (PTMs) …
proteomics is increasingly used to detect changes in posttranslational modifications (PTMs) …
[HTML][HTML] msqrob2PTM: Differential Abundance and Differential Usage Analysis of MS-Based Proteomics Data at the Posttranslational Modification and Peptidoform …
N Demeulemeester, M Gébelin, LC Gomes… - Molecular & Cellular …, 2024 - ASBMB
In the era of open-modification search engines, more post-translational modifications than
ever can be detected by LC-MS/MS-based proteomics. This development can switch …
ever can be detected by LC-MS/MS-based proteomics. This development can switch …
[HTML][HTML] Discovering the landscape of protein modifications
EK Keenan, DK Zachman, MD Hirschey - Molecular cell, 2021 - cell.com
Protein modifications modulate nearly every aspect of cell biology in organisms, ranging
from Archaea to Eukaryotes. The earliest evidence of covalent protein modifications was …
from Archaea to Eukaryotes. The earliest evidence of covalent protein modifications was …
[HTML][HTML] Genome annotation of a model diatom Phaeodactylum tricornutum using an integrated proteogenomic pipeline
M Yang, X Lin, X Liu, J Zhang, F Ge - Molecular plant, 2018 - cell.com
Diatoms comprise a diverse and ecologically important group of eukaryotic phytoplankton
that significantly contributes to marine primary production and global carbon cycling …
that significantly contributes to marine primary production and global carbon cycling …
Statistical models for the analysis of isobaric tags multiplexed quantitative proteomics
G D'Angelo, R Chaerkady, W Yu, DB Hizal… - Journal of proteome …, 2017 - ACS Publications
Mass spectrometry is being used to identify protein biomarkers that can facilitate
development of drug treatment. Mass spectrometry-based labeling proteomic experiments …
development of drug treatment. Mass spectrometry-based labeling proteomic experiments …
Conjugation site analysis of antibody-drug-conjugates (ADCs) by signature ion fingerprinting and normalized area quantitation approach using nano-liquid …
Abstract Trastuzumab-MCC-DM1 (T-DM1) is an antibody-drug conjugate (ADC) that consists
of a monoclonal antibody (mAb) trastuzumab non-cleavably linked to a cytotoxic drug DM1 …
of a monoclonal antibody (mAb) trastuzumab non-cleavably linked to a cytotoxic drug DM1 …
Post-translational modifications of plant cell wall proteins and peptides: a survey from a proteomics point of view
H Canut, C Albenne, E Jamet - … et Biophysica Acta (BBA)-Proteins and …, 2016 - Elsevier
Plant cell wall proteins (CWPs) and peptides are important players in cell walls contributing
to their assembly and their remodeling during development and in response to …
to their assembly and their remodeling during development and in response to …
Flux control through protein phosphorylation in yeast
Protein phosphorylation is one of the most important mechanisms regulating metabolism as
it can directly modify metabolic enzymes by the addition of phosphate groups. Attributed to …
it can directly modify metabolic enzymes by the addition of phosphate groups. Attributed to …