Single-cell and spatial transcriptomics: deciphering brain complexity in health and disease

M Piwecka, N Rajewsky, A Rybak-Wolf - Nature Reviews Neurology, 2023 - nature.com
In the past decade, single-cell technologies have proliferated and improved from their
technically challenging beginnings to become common laboratory methods capable of …

Unraveling aging from transcriptomics

Y Huang, S Zhu, S Yao, H Zhai, C Liu, JDJ Han - Trends in Genetics, 2024 - cell.com
Research into aging constitutes a pivotal endeavor aimed at elucidating the underlying
biological mechanisms governing aging and age-associated diseases, as well as promoting …

Single nuclei transcriptomics delineates complex immune and kidney cell interactions contributing to kidney allograft fibrosis

JM McDaniels, AC Shetty, C Kuscu, C Kuscu… - Kidney international, 2023 - Elsevier
Chronic allograft dysfunction (CAD), characterized histologically by interstitial fibrosis and
tubular atrophy, is the major cause of kidney allograft loss. Here, using single nuclei RNA …

Effects of oxycodone on placental lineages: Evidence from the transcriptome profile of mouse trophoblast giant cells

Z Lyu, JA Kinkade, NJ Bivens, RM Roberts… - Proceedings of the …, 2024 - pnas.org
Pregnant women are often prescribed or abuse opioid drugs. The placenta is likely the key
to understanding how opioids cause adverse pregnancy outcomes. Maternal oxycodone …

Optimized protocol for the multiomics processing of cryopreserved human kidney tissue

SE Gies, S Hänzelmann, D Kylies… - American Journal …, 2024 - journals.physiology.org
Biobanking of tissue from clinically obtained kidney biopsies for later analysis with multiomic
approaches, such as single-cell technologies, proteomics, metabolomics, and the different …

Advances in long-read single-cell transcriptomics

P Kumari, M Kaur, K Dindhoria, B Ashford… - Human Genetics, 2024 - Springer
Long-read single-cell transcriptomics (scRNA-Seq) is revolutionizing the way we profile
heterogeneity in disease. Traditional short-read scRNA-Seq methods are limited in their …

[HTML][HTML] Single-Cell Transcriptomics Sheds Light on Tumor Evolution: Perspectives from City of Hope's Clinical Trial Teams

PA Cosgrove, AH Bild, TH Dellinger, B Badie… - Journal of Clinical …, 2024 - mdpi.com
Tumor heterogeneity is a significant factor influencing cancer treatment effectiveness and
can arise from genetic, epigenetic, and phenotypic variations among cancer cells …

A simple, quick, and partially automated protocol for the isolation of single nuclei from frozen mammalian tissues for single nucleus sequencing

L Stalder, F Koechl, K Hahn, M Sultan… - JoVE (Journal of …, 2023 - jove.com
Single-cell and single-nucleus RNA sequencing have become common laboratory
applications due to the wealth of transcriptomic information that they provide. Single nucleus …

Multi-omic single cell sequencing: Overview and opportunities for kidney disease therapeutic development

S Pregizer, T Vreven, M Mathur… - Frontiers in Molecular …, 2023 - frontiersin.org
Single cell sequencing technologies have rapidly advanced in the last decade and are
increasingly applied to gain unprecedented insights by deconstructing complex biology to its …

Optimized nucleus isolation protocol from frozen mouse tissues for single nucleus RNA sequencing application

MA Minati, A Fages, N Dauguet, J Zhu… - Frontiers in cell and …, 2023 - frontiersin.org
The single cell RNA sequencing technique has been particularly used during the last years,
allowing major discoveries. However, the widespread application of this analysis has …