Tutorial: guidelines for annotating single-cell transcriptomic maps using automated and manual methods
Single-cell transcriptomics can profile thousands of cells in a single experiment and identify
novel cell types, states and dynamics in a wide variety of tissues and organisms. Standard …
novel cell types, states and dynamics in a wide variety of tissues and organisms. Standard …
Cell type ontologies of the Human Cell Atlas
Massive single-cell profiling efforts have accelerated our discovery of the cellular
composition of the human body while at the same time raising the need to formalize this new …
composition of the human body while at the same time raising the need to formalize this new …
Cells of the adult human heart
M Litviňuková, C Talavera-López, H Maatz, D Reichart… - Nature, 2020 - nature.com
Cardiovascular disease is the leading cause of death worldwide. Advanced insights into
disease mechanisms and therapeutic strategies require a deeper understanding of the …
disease mechanisms and therapeutic strategies require a deeper understanding of the …
scGNN is a novel graph neural network framework for single-cell RNA-Seq analyses
Single-cell RNA-sequencing (scRNA-Seq) is widely used to reveal the heterogeneity and
dynamics of tissues, organisms, and complex diseases, but its analyses still suffer from …
dynamics of tissues, organisms, and complex diseases, but its analyses still suffer from …
Single-cell transcriptomics of adult macaque hippocampus reveals neural precursor cell populations
The extent to which neurogenesis occurs in adult primates remains controversial. In this
study, using an optimized single-cell RNA sequencing pipeline, we profiled 207,785 cells …
study, using an optimized single-cell RNA sequencing pipeline, we profiled 207,785 cells …
Single-cell DNA methylome and 3D multi-omic atlas of the adult mouse brain
Cytosine DNA methylation is essential in brain development and is implicated in various
neurological disorders. Understanding DNA methylation diversity across the entire brain in a …
neurological disorders. Understanding DNA methylation diversity across the entire brain in a …
Single-cell transcriptomics for the assessment of cardiac disease
AMA Miranda, V Janbandhu, H Maatz… - Nature Reviews …, 2023 - nature.com
Cardiovascular disease is the leading cause of death globally. An advanced understanding
of cardiovascular disease mechanisms is required to improve therapeutic strategies and …
of cardiovascular disease mechanisms is required to improve therapeutic strategies and …
Computational immunogenomic approaches to predict response to cancer immunotherapies
Cancer immunogenomics is an emerging field that bridges genomics and immunology. The
establishment of large-scale genomic collaborative efforts along with the development of …
establishment of large-scale genomic collaborative efforts along with the development of …
Clustering by measuring local direction centrality for data with heterogeneous density and weak connectivity
Clustering is a powerful machine learning method for discovering similar patterns according
to the proximity of elements in feature space. It is widely used in computer science …
to the proximity of elements in feature space. It is widely used in computer science …
Guided construction of single cell reference for human and mouse lung
Accurate cell type identification is a key and rate-limiting step in single-cell data analysis.
Single-cell references with comprehensive cell types, reproducible and functionally …
Single-cell references with comprehensive cell types, reproducible and functionally …