A Meta-analysis of bacterial communities in food processing facilities: driving forces for assembly of Core and accessory microbiomes across different food …

ZS Xu, T Ju, X Yang, M Gänzle - Microorganisms, 2023 - mdpi.com
Microbial spoilage is a major cause of food waste. Microbial spoilage is dependent on the
contamination of food from the raw materials or from microbial communities residing in food …

Improved sampling and DNA extraction procedures for microbiome analysis in food-processing environments

C Barcenilla, JF Cobo-Díaz, F De Filippis… - Nature …, 2024 - nature.com
Deep investigation of the microbiome of food-production and food-processing environments
through whole-metagenome sequencing (WMS) can provide detailed information on the …

The impact of non-pathogenic bacteria on the spread of virulence and resistance genes

F Dionisio, CPF Domingues, JS Rebelo… - International Journal of …, 2023 - mdpi.com
This review discusses the fate of antimicrobial resistance and virulence genes frequently
present among microbiomes. A central concept in epidemiology is the mean number of …

[HTML][HTML] Microbiome dynamics, antibiotic resistance gene patterns and spoilage-associated genomic potential in fresh anchovies stored in different conditions

G Sequino, V Valentino, A Esposito, S Volpe… - Food Research …, 2024 - Elsevier
Fresh fish is a highly perishable product and is easily spoiled by microbiological activity and
chemical oxidation of lipids. However, microbial spoilage is the main factor linked with the …

Contamination Levels and Phenotypic and Genomic Characterization of Antimicrobial Resistance in Escherichia coli Isolated from Fresh Salad Vegetables in the …

I Habib, RH Al-Rifai, MYI Mohamed, A Ghazawi… - Tropical Medicine and …, 2023 - mdpi.com
Contaminated fresh produce has been identified as a vehicle for human foodborne illness.
The present study investigated the counts, antimicrobial resistance profile, and genome …

Psychrotrophic Bacteria Equipped with Virulence and Colonization Traits Populate the Ice Cream Manufacturing Environment

V Valentino, F De Filippis, G Sequino… - Applied and …, 2023 - Am Soc Microbiol
Several microbial taxa have been associated with food processing facilities, and they might
resist by attaching on tools and equipment even after sanitation procedures, producing …

Unde venis? Bacterial resistance from environmental reservoirs to lettuce: tracking microbiome and resistome over a growth period

MT Gekenidis, V Vollenweider, A Joyce… - FEMS Microbiology …, 2024 - academic.oup.com
Fresh produce is suggested to contribute highly to shaping the gut resistome. We
investigated the impact of pig manure and irrigation water quality on microbiome and …

Sequencing-based analysis of the microbiomes of Spanish food processing facilities reveals environment-specific variation in the dominant taxa and antibiotic …

A Alvarez-Molina, JF Cobo-Díaz, EA Alexa… - Food Research …, 2023 - Elsevier
In the last years, advances in high throughput sequencing technologies have opened the
possibility to broaden environmental monitoring activities in facilities processing food …

The resistome of the food chain: A One Health perspective

E Fernández‐Trapote, M Oliveira… - Microbial …, 2024 - Wiley Online Library
Antimicrobial resistance (AMR) represents a significant global health problem which
challenges Sustainable Development Goal 3 of the United Nations, with growing concerns …

[HTML][HTML] Microbiome mapping in beef processing reveals safety-relevant variations in microbial diversity and genomic features

G Sequino, JF Cobo-Diaz, V Valentino… - Food Research …, 2024 - Elsevier
The microbiome of surfaces along the beef processing chain represents a critical nexus
where microbial ecosystems play a pivotal role in meat quality and safety of end products …