Developments in the tools and methodologies of synthetic biology

R Kelwick, JT MacDonald, AJ Webb… - … in bioengineering and …, 2014 - frontiersin.org
Synthetic biology is principally concerned with the rational design and engineering of
biologically based parts, devices, or systems. However, biological systems are generally …

Incoming RNA virus nucleocapsids containing a 5′-triphosphorylated genome activate RIG-I and antiviral signaling

M Weber, A Gawanbacht, M Habjan, A Rang… - Cell host & …, 2013 - cell.com
Host defense to RNA viruses depends on rapid intracellular recognition of viral RNA by two
cytoplasmic RNA helicases: RIG-I and MDA5. RNA transfection experiments indicate that …

B cell activation involves nanoscale receptor reorganizations and inside-out signaling by Syk

K Kläsener, PC Maity, E Hobeika, J Yang, M Reth - elife, 2014 - elifesciences.org
Binding of antigen to the B cell antigen receptor (BCR) initiates a multitude of events
resulting in B cell activation. How the BCR becomes signaling-competent upon antigen …

The IgM receptor FcμR limits tonic BCR signaling by regulating expression of the IgM BCR

TTT Nguyen, K Kläsener, C Zürn, PA Castillo… - Nature …, 2017 - nature.com
The FcμR receptor for the crystallizable fragment (Fc) of immunoglobulin M (IgM) can
function as a cell-surface receptor for secreted IgM on a variety of cell types. We found here …

ReLo is a simple and rapid colocalization assay to identify and characterize direct protein–protein interactions

HK Salgania, J Metz, M Jeske - Nature Communications, 2024 - nature.com
The characterization of protein-protein interactions (PPIs) is fundamental to the
understanding of biochemical processes. Many methods have been established to identify …

Temporal inhibition of chromatin looping and enhancer accessibility during neuronal remodeling

D Chen, CE McManus, B Radmanesh… - Nature …, 2021 - nature.com
During development, looping of an enhancer to a promoter is frequently observed in
conjunction with temporal and tissue-specific transcriptional activation. The chromatin …

Quantitative methods to investigate the 4D dynamics of heterochromatic repair sites in Drosophila cells

CP Caridi, L Delabaere, H Tjong, H Hopp, D Das… - Methods in …, 2018 - Elsevier
Heterochromatin is mostly composed of long stretches of repeated DNA sequences prone to
ectopic recombination during double-strand break (DSB) repair. In Drosophila,“safe” …

Differential requirements for Src-family kinases in SYK or ZAP70-mediated SLP-76 phosphorylation in lymphocytes

F Fasbender, M Claus, S Wingert, M Sandusky… - Frontiers in …, 2017 - frontiersin.org
In a synthetic biology approach using Schneider (S2) cells, we show that SLP-76 is directly
phosphorylated at tyrosines Y113 and Y128 by SYK in the presence of ITAM-containing …

Extremely rapid and reversible optogenetic perturbation of nuclear proteins in living embryos

AC Kögler, Y Kherdjemil, K Bender, A Rabinowitz… - Developmental Cell, 2021 - cell.com
Many developmental regulators have complex and context-specific roles in different tissues
and stages, making the dissection of their function extremely challenging. As regulatory …

An inverse small molecule screen to design a chemically defined medium supporting long-term growth of Drosophila cell lines

M Burnette, T Brito-Robinson, J Li, J Zartman - Molecular BioSystems, 2014 - pubs.rsc.org
Drosophila cell culture is used as a model system with multiple applications including the
identification of new therapeutic targets in screens, the study of conserved signal …