Elastic modeling of biomembranes and lipid bilayers
FLH Brown - Annu. Rev. Phys. Chem., 2008 - annualreviews.org
The simulation of biological membranes over length and time scales relevant to cellular
biology is not currently feasible using conventional (fully atomic or molecularly detailed) …
biology is not currently feasible using conventional (fully atomic or molecularly detailed) …
Mesoscale computational studies of membrane bilayer remodeling by curvature-inducing proteins
Biological membranes constitute boundaries of cells and cell organelles. These membranes
are soft fluid interfaces whose thermodynamic states are dictated by bending moduli …
are soft fluid interfaces whose thermodynamic states are dictated by bending moduli …
Nanoscale scaffolding domains within the postsynaptic density concentrate synaptic AMPA receptors
HD MacGillavry, Y Song, S Raghavachari, TA Blanpied - Neuron, 2013 - cell.com
Scaffolding molecules at the postsynaptic membrane form the foundation of excitatory
synaptic transmission by establishing the architecture of the postsynaptic density (PSD), but …
synaptic transmission by establishing the architecture of the postsynaptic density (PSD), but …
Lipid and Peptide Diffusion in Bilayers: The Saffman–Delbrück Model and Periodic Boundary Conditions
RM Venable, HI Ingólfsson, MG Lerner… - The Journal of …, 2017 - ACS Publications
The periodic Saffman–Delbrück (PSD) model, an extension of the Saffman–Delbrück
model developed to describe the effects of periodic boundary conditions on the diffusion …
model developed to describe the effects of periodic boundary conditions on the diffusion …
[HTML][HTML] Strong influence of periodic boundary conditions on lateral diffusion in lipid bilayer membranes
The Saffman-Delbrück hydrodynamic model for lipid-bilayer membranes is modified to
account for the periodic boundary conditions commonly imposed in molecular simulations …
account for the periodic boundary conditions commonly imposed in molecular simulations …
Correlated diffusion of membrane proteins and their effect on membrane viscosity
N Oppenheimer, H Diamant - Biophysical Journal, 2009 - cell.com
We extend the Saffman theory of membrane hydrodynamics to account for the correlated
motion of membrane proteins, along with the effect of protein concentration on that …
motion of membrane proteins, along with the effect of protein concentration on that …
Continuum simulations of biomembrane dynamics and the importance of hydrodynamic effects
FLH Brown - Quarterly Reviews of Biophysics, 2011 - cambridge.org
Traditional particle-based simulation strategies are impractical for the study of lipid bilayers
and biological membranes over the longest length and time scales (microns, seconds and …
and biological membranes over the longest length and time scales (microns, seconds and …
Systems biology and physical biology of clathrin-mediated endocytosis
In this review, we describe the application of experimental data and modeling of intracellular
endocytic trafficking mechanisms with a focus on the process of clathrin-mediated …
endocytic trafficking mechanisms with a focus on the process of clathrin-mediated …
Hybrid Elastic and Discrete-Particle Approach to Biomembrane Dynamics<? format?> with Application to the Mobility of Curved Integral Membrane Proteins
We introduce a simulation strategy to consistently couple continuum biomembrane
dynamics to the motion of discrete biological macromolecules residing within or on the …
dynamics to the motion of discrete biological macromolecules residing within or on the …
Particle motion nearby rough surfaces
We study the hydrodynamic coupling between particles and solid, rough boundaries
characterized by random surface textures. Using the Lorentz reciprocal theorem, we derive …
characterized by random surface textures. Using the Lorentz reciprocal theorem, we derive …