Molecular and evolutionary processes generating variation in gene expression

MS Hill, P Vande Zande, PJ Wittkopp - Nature Reviews Genetics, 2021 - nature.com
Heritable variation in gene expression is common within and between species. This
variation arises from mutations that alter the form or function of molecular gene regulatory …

Plant transcription factors—being in the right place with the right company

L Strader, D Weijers, D Wagner - Current opinion in plant biology, 2022 - Elsevier
Transcriptional regulation underlies many of the growth and developmental processes that
shape plants as well as their adaptation to their environment. Key to transcriptional control …

Anthoceros genomes illuminate the origin of land plants and the unique biology of hornworts

FW Li, T Nishiyama, M Waller, E Frangedakis, J Keller… - Nature plants, 2020 - nature.com
Hornworts comprise a bryophyte lineage that diverged from other extant land plants> 400
million years ago and bears unique biological features, including a distinct sporophyte …

The causes of evolvability and their evolution

JL Payne, A Wagner - Nature Reviews Genetics, 2019 - nature.com
Evolvability is the ability of a biological system to produce phenotypic variation that is both
heritable and adaptive. It has long been the subject of anecdotal observations and …

Evolution of plant hormone response pathways

MA Blázquez, DC Nelson… - Annual Review of Plant …, 2020 - annualreviews.org
This review focuses on the evolution of plant hormone signaling pathways. Like the
chemical nature of the hormones themselves, the signaling pathways are diverse. Therefore …

Data access for the 1,000 Plants (1KP) project

N Matasci, LH Hung, Z Yan, EJ Carpenter… - …, 2014 - academic.oup.com
Abstract The 1,000 plants (1KP) project is an international multi-disciplinary consortium that
has generated transcriptome data from over 1,000 plant species, with exemplars for all of the …

Algal ancestor of land plants was preadapted for symbiosis

PM Delaux, GV Radhakrishnan… - Proceedings of the …, 2015 - National Acad Sciences
Colonization of land by plants was a major transition on Earth, but the developmental and
genetic innovations required for this transition remain unknown. Physiological studies and …

The F-box protein UFO controls flower development by redirecting the master transcription factor LEAFY to new cis-elements

P Rieu, L Turchi, E Thévenon, E Zarkadas, M Nanao… - Nature Plants, 2023 - nature.com
In angiosperms, flower development requires the combined action of the transcription factor
LEAFY (LFY) and the ubiquitin ligase adaptor F-box protein, UNUSUAL FLORAL ORGANS …

An evolutionary biochemist's perspective on promiscuity

SD Copley - Trends in biochemical sciences, 2015 - cell.com
Evolutionary biochemists define enzyme promiscuity as the ability to catalyze secondary
reactions that are physiologically irrelevant, either because they are too inefficient to affect …

Similarity regression predicts evolution of transcription factor sequence specificity

SA Lambert, AWH Yang, A Sasse, G Cowley, M Albu… - Nature …, 2019 - nature.com
Transcription factor (TF) binding specificities (motifs) are essential for the analysis of gene
regulation. Accurate prediction of TF motifs is critical, because it is infeasible to assay all TFs …