Species-level functional profiling of metagenomes and metatranscriptomes
Functional profiles of microbial communities are typically generated using comprehensive
metagenomic or metatranscriptomic sequence read searches, which are time-consuming …
metagenomic or metatranscriptomic sequence read searches, which are time-consuming …
[HTML][HTML] Global marine microbial diversity and its potential in bioprospecting
The past two decades has witnessed a remarkable increase in the number of microbial
genomes retrieved from marine systems,. However, it has remained challenging to translate …
genomes retrieved from marine systems,. However, it has remained challenging to translate …
Abiotic selection of microbial genome size in the global ocean
Strong purifying selection is considered a major evolutionary force behind small microbial
genomes in the resource-poor photic ocean. However, very little is currently known about …
genomes in the resource-poor photic ocean. However, very little is currently known about …
Bioplastic (poly-3-hydroxybutyrate) production by the marine bacterium Pseudodonghicola xiamenensis through date syrup valorization and structural assessment of …
Biobased degradable plastics have received significant attention owing to their potential
application as a green alternative to synthetic plastics. A dye-based procedure was used to …
application as a green alternative to synthetic plastics. A dye-based procedure was used to …
Production and Characterization of Bioplastic by Polyhydroxybutyrate Accumulating Erythrobacter aquimaris Isolated from Mangrove Rhizosphere
The synthesis of bioplastic from marine microbes has a great attendance in the realm of
biotechnological applications for sustainable eco-management. This study aims to isolate …
biotechnological applications for sustainable eco-management. This study aims to isolate …
Higher classification sensitivity of short metagenomic reads with CLARK-S
The growing number of metagenomic studies in medicine and environmental sciences is
creating increasing demands on the computational infrastructure designed to analyze these …
creating increasing demands on the computational infrastructure designed to analyze these …
Trait biases in microbial reference genomes
S Albright, S Louca - Scientific Data, 2023 - nature.com
Common culturing techniques and priorities bias our discovery towards specific traits that
may not be representative of microbial diversity in nature. So far, these biases have not been …
may not be representative of microbial diversity in nature. So far, these biases have not been …
[图书][B] The Red Sea: environmental gradients shape a natural laboratory in a nascent ocean
This chapter introduces the environmental gradients that characterize the broader Red Sea
habitat. The Red Sea is formed by an actively spreading rift and notably has only one natural …
habitat. The Red Sea is formed by an actively spreading rift and notably has only one natural …
Polyhydroxybutyrate (PHB)-Based Biodegradable Polymer from Agromyces indicus: Enhanced Production, Characterization, and Optimization
Recently, there has been significant interest in bio-based degradable plastics owing to their
potential as a green and sustainable alternative to synthetic plastics due to their …
potential as a green and sustainable alternative to synthetic plastics due to their …
Taxa-function robustness in microbial communities
A Eng, E Borenstein - Microbiome, 2018 - Springer
Background The species composition of a microbial community is rarely fixed and often
experiences fluctuations of varying degrees and at varying frequencies. These perturbations …
experiences fluctuations of varying degrees and at varying frequencies. These perturbations …