Computational Models of the NF-κB Signalling Pathway

RA Williams, J Timmis, EE Qwarnstrom - Computation, 2014 - mdpi.com
In this review article, we discuss the current state of computational modelling of the nuclear
factor-kappa B (NF-κ B) signalling pathway. NF-κ B is a transcription factor, which is …

NF-κB oscillations translate into functionally related patterns of gene expression

S Zambrano, I De Toma, A Piffer, ME Bianchi, A Agresti - Elife, 2016 - elifesciences.org
Several transcription factors (TFs) oscillate, periodically relocating between the cytoplasm
and the nucleus. NF-κB, which plays key roles in inflammation and cancer, displays …

NF-κB, the importance of being dynamic: role and insights in cancer

F Colombo, S Zambrano, A Agresti - Biomedicines, 2018 - mdpi.com
In this review, we aim at describing the results obtained in the past years on dynamics
features defining NF-κB regulatory functions, as we believe that these developments might …

Disturbed flow induces a sustained, stochastic NF-κB activation which may support intracranial aneurysm growth in vivo

DC Baeriswyl, I Prionisti, T Peach, G Tsolkas… - Scientific reports, 2019 - nature.com
Intracranial aneurysms are associated with disturbed velocity patterns, and chronic
inflammation, but the relevance for these findings are currently unknown. Here, we show that …

High-throughput analysis of NF-κB dynamics in single cells reveals basal nuclear localization of NF-κB and spontaneous activation of oscillations

S Zambrano, ME Bianchi, A Agresti - PLoS One, 2014 - journals.plos.org
NF-κB is a transcription factor that upon activation undergoes cycles of cytoplasmic-to-
nuclear and nuclear-to-cytoplasmic transport, giving rise to so called “oscillations”. In turn …

Molecular stripping, targets and decoys as modulators of oscillations in the NF-κB/IκBα/DNA genetic network

Z Wang, DA Potoyan… - Journal of The Royal …, 2016 - royalsocietypublishing.org
Eukaryotic transcription factors in the NF-κB family are central components of an extensive
genetic network that activates cellular responses to inflammation and to a host of other …

First responders shape a prompt and sharp NF-κB-mediated transcriptional response to TNF-α

S Zambrano, A Loffreda, E Carelli, G Stefanelli… - IScience, 2020 - cell.com
Nuclear factor (NF)-κB controls the transcriptional response to inflammatory signals by
translocating into the nucleus, but we lack a single-cell characterization of the resulting …

Unraveling cellular pathways contributing to drug-induced liver injury by dynamical modeling

IA Kuijper, H Yang, B Van De Water… - Expert opinion on drug …, 2017 - Taylor & Francis
Introduction: Drug-induced liver injury (DILI) is a significant threat to human health and a
major problem in drug development. It is hard to predict due to its idiosyncratic nature and …

Quantitative analysis reveals crosstalk mechanisms of heat shock-induced attenuation of NF-κB signaling at the single cell level

M Kardyńska, A Paszek, J Śmieja… - PLoS computational …, 2018 - journals.plos.org
Elevated temperature induces the heat shock (HS) response, which modulates cell
proliferation, apoptosis, the immune and inflammatory responses. However, specific …

A plausible identifiable model of the canonical NF-κB signaling pathway

J Jaruszewicz-Błońska, I Kosiuk, W Prus, T Lipniacki - PLoS One, 2023 - journals.plos.org
An overwhelming majority of mathematical models of regulatory pathways, including the
intensively studied NF-κ B pathway, remains non-identifiable, meaning that their parameters …