Meta-analysis methods for genome-wide association studies and beyond
E Evangelou, JPA Ioannidis - Nature Reviews Genetics, 2013 - nature.com
Meta-analysis of genome-wide association studies (GWASs) has become a popular method
for discovering genetic risk variants. Here, we overview both widely applied and newer …
for discovering genetic risk variants. Here, we overview both widely applied and newer …
Genomewide association studies and assessment of the risk of disease
TA Manolio - New England journal of medicine, 2010 - Mass Medical Soc
Over the past 5 years, genomewide association studies have yielded a wealth of insight into
genes and chromosomal loci that contribute to susceptibility to disease. This article, the …
genes and chromosomal loci that contribute to susceptibility to disease. This article, the …
The STROMICS genome study: deep whole-genome sequencing and analysis of 10K Chinese patients with ischemic stroke reveal complex genetic and phenotypic …
S Cheng, Z Xu, S Bian, X Chen, Y Shi, Y Li, Y Duan… - Cell Discovery, 2023 - nature.com
Ischemic stroke is a leading cause of global mortality and long-term disability. However,
there is a paucity of whole-genome sequencing studies on ischemic stroke, resulting in …
there is a paucity of whole-genome sequencing studies on ischemic stroke, resulting in …
Partitioning heritability of regulatory and cell-type-specific variants across 11 common diseases
Regulatory and coding variants are known to be enriched with associations identified by
genome-wide association studies (GWASs) of complex disease, but their contributions to …
genome-wide association studies (GWASs) of complex disease, but their contributions to …
Estimating individual admixture proportions from next generation sequencing data
Inference of population structure and individual ancestry is important both for population
genetics and for association studies. With next generation sequencing technologies it is …
genetics and for association studies. With next generation sequencing technologies it is …
Data quality control in genetic case-control association studies
This protocol details the steps for data quality assessment and control that are typically
carried out during case-control association studies. The steps described involve the …
carried out during case-control association studies. The steps described involve the …
A flexible and accurate genotype imputation method for the next generation of genome-wide association studies
BN Howie, P Donnelly, J Marchini - PLoS genetics, 2009 - journals.plos.org
Genotype imputation methods are now being widely used in the analysis of genome-wide
association studies. Most imputation analyses to date have used the HapMap as a reference …
association studies. Most imputation analyses to date have used the HapMap as a reference …
Genome-wide association study identifies variants at CLU and PICALM associated with Alzheimer's disease
We undertook a two-stage genome-wide association study (GWAS) of Alzheimer's disease
(AD) involving over 16,000 individuals, the most powerful AD GWAS to date. In stage 1 …
(AD) involving over 16,000 individuals, the most powerful AD GWAS to date. In stage 1 …
Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease
G Trynka, KA Hunt, NA Bockett, J Romanos, V Mistry… - Nature …, 2011 - nature.com
Using variants from the 1000 Genomes Project pilot European CEU dataset and data from
additional resequencing studies, we densely genotyped 183 non-HLA risk loci previously …
additional resequencing studies, we densely genotyped 183 non-HLA risk loci previously …
Genome-wide association study identifies variants at CLU and CR1 associated with Alzheimer's disease
The gene encoding apolipoprotein E (APOE) on chromosome 19 is the only confirmed
susceptibility locus for late-onset Alzheimer's disease. To identify other risk loci, we …
susceptibility locus for late-onset Alzheimer's disease. To identify other risk loci, we …