Biofilm antimicrobial susceptibility testing: where are we and where could we be going?

T Coenye - Clinical microbiology reviews, 2023 - Am Soc Microbiol
Our knowledge about the fundamental aspects of biofilm biology, including the mechanisms
behind the reduced antimicrobial susceptibility of biofilms, has increased drastically over the …

Current affairs of microbial genome-wide association studies: approaches, bottlenecks and analytical pitfalls

JE San, S Baichoo, A Kanzi, Y Moosa… - Frontiers in …, 2020 - frontiersin.org
Microbial genome-wide association studies (mGWAS) are a new and exciting research field
that is adapting human GWAS methods to understand how variations in microbial genomes …

[HTML][HTML] Predicting Pseudomonas aeruginosa susceptibility phenotypes from whole genome sequence resistome analysis

S Cortes-Lara, E del Barrio-Tofiño… - Clinical Microbiology …, 2021 - Elsevier
Objectives The aim was to develop and validate a Pseudomonas aeruginosa genotypic
resistance score, based on analysis of the whole genome sequence resistome, to predict …

Comparative genomics of clinical strains of Pseudomonas aeruginosa strains isolated from different geographic sites

D Subedi, AK Vijay, GS Kohli, SA Rice, M Willcox - Scientific reports, 2018 - nature.com
The large and complex genome of Pseudomonas aeruginosa, which consists of significant
portions (up to 20%) of transferable genetic elements contributes to the rapid development …

Multidrug resistance (MDR) and collateral sensitivity in bacteria, with special attention to genetic and evolutionary aspects and to the perspectives of antimicrobial …

A Fodor, BA Abate, P Deák, L Fodor, E Gyenge… - Pathogens, 2020 - mdpi.com
Antibiotic poly-resistance (multidrug-, extreme-, and pan-drug resistance) is controlled by
adaptive evolution. Darwinian and Lamarckian interpretations of resistance evolution are …

Role of RND efflux pumps in drug resistance of cystic fibrosis pathogens

VC Scoffone, G Trespidi, G Barbieri, S Irudal, E Perrin… - Antibiotics, 2021 - mdpi.com
Drug resistance represents a great concern among people with cystic fibrosis (CF), due to
the recurrent and prolonged antibiotic therapy they should often undergo. Among Multi Drug …

The core and accessory Hfq interactomes across Pseudomonas aeruginosa lineages

J Trouillon, K Han, I Attrée, S Lory - Nature Communications, 2022 - nature.com
The major RNA-binding protein Hfq interacts with mRNAs, either alone or together with
regulatory small noncoding RNAs (sRNAs), affecting mRNA translation and degradation in …

Genomic characterisation of an international Pseudomonas aeruginosa reference panel indicates that the two major groups draw upon distinct mobile gene pools

L Freschi, C Bertelli, J Jeukens… - FEMS microbiology …, 2018 - academic.oup.com
Pseudomonas aeruginosa is an important opportunistic pathogen, especially in the context
of infections of cystic fibrosis (CF). In order to facilitate coordinated study of this pathogen, an …

Effects of dairy manure-based amendments and soil texture on lettuce-and radish-associated microbiota and resistomes

GKP Guron, G Arango-Argoty, L Zhang, A Pruden… - Msphere, 2019 - Am Soc Microbiol
Dairy cattle are routinely treated with antibiotics, and the resulting manure or composted
manure is commonly used as a soil amendment for crop production, raising questions …

[HTML][HTML] Genotypes and phenotypes of Enterococci isolated from broiler chickens

MA Rehman, X Yin, R Zaheer, N Goji… - … in Sustainable Food …, 2018 - frontiersin.org
The objective of this study was to investigate the distribution and persistence of antimicrobial
resistance genotypes of enterococci from broilers fed bambermycin (BAM), penicillin (PEN) …