Scaling up: A guide to high‐throughput genomic approaches for biodiversity analysis

TM Porter, M Hajibabaei - Molecular ecology, 2018 - Wiley Online Library
The purpose of this review is to present the most common and emerging DNA‐based
methods used to generate data for biodiversity and biomonitoring studies. As environmental …

Revisiting the 'Gadgil effect': do interguild fungal interactions control carbon cycling in forest soils?

CW Fernandez, PG Kennedy - New phytologist, 2016 - Wiley Online Library
In forest ecosystems, ectomycorrhizal and saprotrophic fungi play a central role in the
breakdown of soil organic matter (SOM). Competition between these two fungal guilds has …

[图书][B] Environmental DNA: For biodiversity research and monitoring

P Taberlet, A Bonin, L Zinger, E Coissac - 2018 - books.google.com
Environmental DNA (eDNA) refers to DNA that can be extracted from environmental
samples (such as soil, water, feces, or air) without the prior isolation of any target organism …

Improved software detection and extraction of ITS1 and ITS 2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing …

J Bengtsson‐Palme, M Ryberg… - Methods in ecology …, 2013 - Wiley Online Library
The nuclear ribosomal internal transcribed spacer (ITS) region is the primary choice for
molecular identification of fungi. Its two highly variable spacers (ITS 1 and ITS 2) are usually …

New primers to amplify the fungal ITS2 region–evaluation by 454-sequencing of artificial and natural communities

K Ihrmark, ITM Bödeker, K Cruz-Martinez… - FEMS microbiology …, 2012 - academic.oup.com
With recent methodological advances, molecular markers are increasingly used for semi-
quantitative analyses of fungal communities. The aim to preserve quantitative relationships …

Forgotten fungi—the gut mycobiome in human health and disease

CE Huseyin, PW O'Toole, PD Cotter… - FEMS Microbiology …, 2017 - academic.oup.com
The human body is home to a complex and diverse microbial ecosystem that plays a central
role in host health. This includes a diversity of fungal species that is collectively referred to …

[HTML][HTML] Inter-plant communication through mycorrhizal networks mediates complex adaptive behaviour in plant communities

MA Gorzelak, AK Asay, BJ Pickles, SW Simard - AoB plants, 2015 - academic.oup.com
Adaptive behaviour of plants, including rapid changes in physiology, gene regulation and
defence response, can be altered when linked to neighbouring plants by a mycorrhizal …

Mycorrhizal networks: mechanisms, ecology and modelling

SW Simard, KJ Beiler, MA Bingham, JR Deslippe… - Fungal Biology …, 2012 - Elsevier
Mycorrhizal networks, defined as a common mycorrhizal mycelium linking the roots of at
least two plants, occur in all major terrestrial ecosystems. This review discusses the recent …

Ectomycorrhizal lifestyle in fungi: global diversity, distribution, and evolution of phylogenetic lineages

L Tedersoo, TW May, ME Smith - Mycorrhiza, 2010 - Springer
The ectomycorrhizal (EcM) symbiosis involves a large number of plant and fungal taxa
worldwide. During studies on EcM diversity, numerous misidentifications, and contradictory …

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

M Buée, M Reich, C Murat, E Morin… - New …, 2009 - Wiley Online Library
Soil fungi play a major role in ecological and biogeochemical processes in forests. Little is
known, however, about the structure and richness of different fungal communities and the …