[HTML][HTML] Eleven grand challenges in single-cell data science

D Lähnemann, J Köster, E Szczurek, DJ McCarthy… - Genome biology, 2020 - Springer
The recent boom in microfluidics and combinatorial indexing strategies, combined with low
sequencing costs, has empowered single-cell sequencing technology. Thousands—or even …

Extracellular vesicles: A bright star of nanomedicine

P Wu, B Zhang, DKW Ocansey, W Xu, H Qian - Biomaterials, 2021 - Elsevier
Extracellular vesicles (EVs) have unique structural, compositional, and morphological
characteristics as well as predominant physiochemical stability and biocompatibility …

Emerging droplet microfluidics

L Shang, Y Cheng, Y Zhao - Chemical reviews, 2017 - ACS Publications
Droplet microfluidics generates and manipulates discrete droplets through immiscible
multiphase flows inside microchannels. Due to its remarkable advantages, droplet …

Single‐cell analysis using droplet microfluidics

K Matuła, F Rivello, WTS Huck - Advanced Biosystems, 2020 - Wiley Online Library
Droplet microfluidics has revolutionized the study of single cells. The ability to
compartmentalize cells within picoliter droplets in microfluidic devices has opened up a wide …

scNanoHi-C: a single-cell long-read concatemer sequencing method to reveal high-order chromatin structures within individual cells

W Li, J Lu, P Lu, Y Gao, Y Bai, K Chen, X Su, M Li… - Nature …, 2023 - nature.com
The high-order three-dimensional (3D) organization of regulatory genomic elements
provides a topological basis for gene regulation, but it remains unclear how multiple …

[HTML][HTML] Advancements in next-generation sequencing

SE Levy, RM Myers - Annual review of genomics and human …, 2016 - annualreviews.org
The term next-generation sequencing is almost a decade old, but it remains the colloquial
way to describe highly parallel or high-output sequencing methods that produce data at or …

Unravelling biology and shifting paradigms in cancer with single-cell sequencing

T Baslan, J Hicks - Nature Reviews Cancer, 2017 - nature.com
The fundamental operative unit of a cancer is the genetically and epigenetically innovative
single cell. Whether proliferating or quiescent, in the primary tumour mass or disseminated …

Single-cell whole-genome analyses by Linear Amplification via Transposon Insertion (LIANTI)

C Chen, D Xing, L Tan, H Li, G Zhou, L Huang, XS Xie - Science, 2017 - science.org
Single-cell genomics is important for biology and medicine. However, current whole-
genome amplification (WGA) methods are limited by low accuracy of copy-number variation …

Accurate genomic variant detection in single cells with primary template-directed amplification

V Gonzalez-Pena, S Natarajan, Y Xia… - Proceedings of the …, 2021 - National Acad Sciences
Improvements in whole genome amplification (WGA) would enable new types of basic and
applied biomedical research, including studies of intratissue genetic diversity that require …

Scaling by shrinking: empowering single-cell'omics' with microfluidic devices

SM Prakadan, AK Shalek, DA Weitz - Nature Reviews Genetics, 2017 - nature.com
Recent advances in cellular profiling have demonstrated substantial heterogeneity in the
behaviour of cells once deemed'identical', challenging fundamental notions of …