A chromosome-level genome assembly for the Silkie chicken resolves complete sequences for key chicken metabolic, reproductive, and immunity genes

F Zhu, ZT Yin, QS Zhao, YX Sun, YC Jie… - Communications …, 2023 - nature.com
A set of high-quality pan-genomes would help identify important genes that are still
hidden/incomplete in bird reference genomes. In an attempt to address these issues, we …

The flight of chicken genomics and allied omics-a mini review

N Sukhija, KK Kanaka, RC Goli, P Kapoor… - Ecological Genetics and …, 2023 - Elsevier
Humans mostly obtain animal-based proteins through chicken meat and eggs since there
are no societal taboos. The modern chicken is most effective for producing affordable and …

High quality assemblies of four indigenous chicken genomes and related functional data resources

S Wu, K Wang, T Dou, S Yuan, S Yan, Z Xu, Y Liu… - Scientific Data, 2024 - nature.com
Many lines of evidence indicate that red jungle fowl (RJF) is the primary ancestor of
domestic chickens. Although multiple versions of RJF (galgal2-galgal5 and GRCg6a) and …

A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants

ES Rice, A Alberdi, J Alfieri, G Athrey, JR Balacco… - BMC biology, 2023 - Springer
Background The red junglefowl, the wild outgroup of domestic chickens, has historically
served as a reference for genomic studies of domestic chickens. These studies have …

Feed the Future Innovation Lab for Genomics to Improve Poultry: a holistic approach to improve indigenous chicken production focusing on resilience to Newcastle …

H Zhou, I Baltenweck, J Dekkers… - World's Poultry …, 2024 - Taylor & Francis
Small-scale poultry production in Africa plays a significant role in alleviating malnutrition and
poverty in rural communities. Global climate change and infectious poultry disease such as …

[HTML][HTML] Annotations of four high-quality indigenous chicken genomes identify more than one thousand missing genes in subtelomeric regions and micro …

S Wu, T Dou, S Yuan, S Yan, Z Xu, Y Liu, Z Jian, J Zhao… - BMC genomics, 2024 - Springer
Background Although multiple chicken genomes have been assembled and annotated, the
numbers of protein-coding genes in chicken genomes and their variation among breeds are …

Assessing the feasibility, safety, and nutritional quality of using wild-caught pest flies in animal feed

K Van Nest, SE Swistek, ML Olmstead… - Journal of Economic …, 2024 - academic.oup.com
Studies have investigated the potential of using farmed insects in animal feeds; however,
little research has been done using wild-caught insects for this purpose. Concerns about …

Enriched atlas of lncRNA and protein-coding genes for the GRCg7b chicken assembly and its functional annotation across 47 tissues

F Degalez, M Charles, S Foissac, H Zhou, D Guan… - Scientific Reports, 2024 - nature.com
Gene atlases for livestock are steadily improving thanks to new genome assemblies and
new expression data improving the gene annotation. However, gene content varies across …

A first complete catalog of highly expressed genes in eight chicken tissues reveals uncharacterized gene families specific for the chicken testis

B Piégu, G Lefort, C Douet, M Milhes… - Physiological …, 2024 - journals.physiology.org
Based on next-generation sequencing, we established a repertoire of differentially
overexpressed genes (DoEGs) in eight adult chicken tissues: the testis, brain, lung, liver …

GEGA (Gallus Enriched Gene Annotation): an online tool providing genomics and functional information across 47 tissues for a chicken gene-enriched atlas gathering …

F Degalez, P Bardou… - NAR Genomics and …, 2024 - academic.oup.com
GEGA is a user-friendly tool designed to navigate through various genomic and functional
information related to an enriched gene atlas in chicken that integrates the gene catalogues …