Engineering pyrrolysine systems for genetic code expansion and reprogramming

DL Dunkelmann, JW Chin - Chemical Reviews, 2024 - ACS Publications
Over the past 16 years, genetic code expansion and reprogramming in living organisms has
been transformed by advances that leverage the unique properties of pyrrolysyl-tRNA …

Genetic code expansion: inception, development, commercialization

M Manandhar, E Chun… - Journal of the American …, 2021 - ACS Publications
Virtually all natural proteins are built from only 20 amino acids, and while this makes
possible all the functions they perform, the ability to encode other amino acids selected for …

Evolution of translation machinery in recoded bacteria enables multi-site incorporation of nonstandard amino acids

M Amiram, AD Haimovich, C Fan, YS Wang… - Nature …, 2015 - nature.com
Expansion of the genetic code with nonstandard amino acids (nsAAs) has enabled
biosynthesis of proteins with diverse new chemistries. However, this technology has been …

Biosynthesis and genetic encoding of phosphothreonine through parallel selection and deep sequencing

MS Zhang, SF Brunner, N Huguenin-Dezot, AD Liang… - Nature …, 2017 - nature.com
The phosphorylation of threonine residues in proteins regulates diverse processes in
eukaryotic cells, and thousands of threonine phosphorylations have been identified. An …

Site-specific dual encoding and labeling of proteins via genetic code expansion

RM Bednar, PA Karplus, RA Mehl - Cell chemical biology, 2023 - cell.com
The ability to selectively modify proteins at two or more defined locations opens new
avenues for manipulating, engineering, and studying living systems. As a chemical biology …

Electrostatic control of photoisomerization pathways in proteins

MG Romei, CY Lin, II Mathews, SG Boxer - Biophysical Journal, 2020 - cell.com
Adam W. Duster1, Hai Lin2. 1Integrative and Systems Biology, University of Colorado
Denver, Denver, CO, USA, 2Chemistry, University of Colorado Denver, Denver, CO, USA …

Protein-Based Model for Energy Transfer between Photosynthetic Light-Harvesting Complexes Is Constructed Using a Direct Protein–Protein Conjugation Strategy

AJ Bischoff, LM Hamerlynck, AJ Li… - Journal of the …, 2023 - ACS Publications
Photosynthetic organisms utilize dynamic and complex networks of pigments bound within
light-harvesting complexes to transfer solar energy from antenna complexes to reaction …

Applications of genetic code expansion in studying protein post-translational modification

J Chen, YH Tsai - Journal of Molecular Biology, 2022 - Elsevier
Various post-translational modifications can naturally occur on proteins, regulating the
activity, subcellular localization, interaction, or stability of the proteins. However, it can be …

Functional analysis of protein post‐translational modifications using genetic codon expansion

T Peng, T Das, K Ding, HC Hang - Protein Science, 2023 - Wiley Online Library
Post‐translational modifications (PTMs) of proteins not only exponentially increase the
diversity of proteoforms, but also contribute to dynamically modulating the localization …

Polyspecific pyrrolysyl-tRNA synthetases from directed evolution

LT Guo, YS Wang, A Nakamura… - Proceedings of the …, 2014 - National Acad Sciences
Pyrrolysyl-tRNA synthetase (PylRS) and its cognate tRNAPyl have emerged as ideal
translation components for genetic code innovation. Variants of the enzyme facilitate the …