Proteomics by mass spectrometry: approaches, advances, and applications

JR Yates, CI Ruse… - Annual review of …, 2009 - annualreviews.org
Mass spectrometry (MS) is the most comprehensive and versatile tool in large-scale
proteomics. In this review, we dissect the overall framework of the MS experiment into its key …

Protein–protein interactions: switch from classical methods to proteomics and bioinformatics-based approaches

AG Ngounou Wetie, I Sokolowska, AG Woods… - Cellular and molecular …, 2014 - Springer
Following the sequencing of the human genome and many other organisms, research on
protein-coding genes and their functions (functional genomics) has intensified …

Metabolic turnover of synaptic proteins: kinetics, interdependencies and implications for synaptic maintenance

LD Cohen, R Zuchman, O Sorokina, A Müller… - PloS one, 2013 - journals.plos.org
Chemical synapses contain multitudes of proteins, which in common with all proteins, have
finite lifetimes and therefore need to be continuously replaced. Given the huge numbers of …

Proteomics analysis of human skeletal muscle reveals novel abnormalities in obesity and type 2 diabetes

H Hwang, BP Bowen, N Lefort, CR Flynn… - Diabetes, 2010 - Am Diabetes Assoc
OBJECTIVE Insulin resistance in skeletal muscle is an early phenomenon in the
pathogenesis of type 2 diabetes. Studies of insulin resistance usually are highly focused …

Investigation of stable and transient protein–protein interactions: past, present, and future

AG Ngounou Wetie, I Sokolowska, AG Woods… - …, 2013 - Wiley Online Library
This article presents an overview of the literature and a review of recent advances in the
analysis of stable and transient protein–protein interactions (PPI s) with a focus on their …

Recent advances in quantitative neuroproteomics

GE Craft, A Chen, AC Nairn - Methods, 2013 - Elsevier
The field of proteomics is undergoing rapid development in a number of different areas
including improvements in mass spectrometric platforms, peptide identification algorithms …

Quantitative proteomic analysis of primary neurons reveals diverse changes in synaptic protein content in fmr1 knockout mice

L Liao, SK Park, T Xu, P Vanderklish… - Proceedings of the …, 2008 - National Acad Sciences
Fragile X syndrome (FXS) is a common inherited form of mental retardation that is caused, in
the vast majority of cases, by the transcriptional silencing of a single gene, fmr1. The …

Direct comparison of MS‐based label‐free and SILAC quantitative proteome profiling strategies in primary retinal M üller cells

J Merl, M Ueffing, SM Hauck, C von Toerne - Proteomics, 2012 - Wiley Online Library
To better understand the involvement of retinal Müller glial (RMG) cells in retinal diseases,
we phenotyped primary porcine RMGs in dependence of cultivation time using different …

Potential biomarkers in psychiatry: focus on the cholesterol system

AG Woods, I Sokolowska, R Taurines… - Journal of cellular …, 2012 - Wiley Online Library
Abstract● Introduction● Methods for proteomic analysis–Sample fractionation/biochemical
fractionation–MS● The cholesterol system–Cholesterol and apolipoproteins–Cholesterol …

MST3 kinase phosphorylates TAO1/2 to enable Myosin Va function in promoting spine synapse development

SK Ultanir, S Yadav, NT Hertz, JA Oses-Prieto… - Neuron, 2014 - cell.com
Summary Mammalian Sterile 20 (Ste20)-like kinase 3 (MST3) is a ubiquitously expressed
kinase capable of enhancing axon outgrowth. Whether and how MST3 kinase signaling …