Cell spheroids as a versatile research platform: formation mechanisms, high throughput production, characterization and applications

MC Decarli, R Amaral, DP Dos Santos, LB Tofani… - …, 2021 - iopscience.iop.org
Abstract Three-dimensional (3D) cell culture has tremendous advantages to closely mimic
the in vivo architecture and microenvironment of healthy tissue and organs, as well as of …

PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems

A Ghaffarizadeh, R Heiland, SH Friedman… - PLoS computational …, 2018 - journals.plos.org
Many multicellular systems problems can only be understood by studying how cells move,
grow, divide, interact, and die. Tissue-scale dynamics emerge from systems of many …

[HTML][HTML] Turning Nature's own processes into design strategies for living bone implant biomanufacturing: a decade of Developmental Engineering

I Papantoniou, GN Hall, N Loverdou, R Lesage… - Advanced Drug Delivery …, 2021 - Elsevier
A decade after the term developmental engineering (DE) was coined to indicate the use of
developmental processes as blueprints for the design and development of engineered living …

Metabolic reprogramming dynamics in tumor spheroids: Insights from a multicellular, multiscale model

M Roy, SD Finley - PLoS computational biology, 2019 - journals.plos.org
Mathematical modeling provides the predictive ability to understand the metabolic
reprogramming and complex pathways that mediate cancer cells' proliferation. We present a …

[HTML][HTML] Physical mechanisms driving cell sorting in Hydra

O Cochet-Escartin, TT Locke, WH Shi, RE Steele… - Biophysical journal, 2017 - cell.com
Cell sorting, whereby a heterogeneous cell mixture organizes into distinct tissues, is a
fundamental patterning process in development. Hydra is a powerful model system for …

Blood vessel tortuosity selects against evolution of aggressive tumor cells in confined tissue environments: A modeling approach

A Szabó, RMH Merks - PLoS computational biology, 2017 - journals.plos.org
Cancer is a disease of cellular regulation, often initiated by genetic mutation within cells, and
leading to a heterogeneous cell population within tissues. In the competition for nutrients …

Infiltration of tumor spheroids by activated immune cells

M Mukherjee, O Chepizhko, MC Lionetti… - Physical …, 2023 - iopscience.iop.org
Recent years have seen a tremendous growth of interest in understanding the role that the
adaptive immune system could play in interdicting tumor progression. In this context, it has …

A hybrid computational model of cancer spheroid growth with ribose-induced collagen stiffening

M Botticelli, J Metzcar, T Phillips, S Cox… - bioRxiv, 2024 - biorxiv.org
Metastasis, the leading cause of death in cancer patients, arises when cancer cells
disseminate from a primary solid tumour to distant organs. Growth and invasion of the solid …

Parameterized computational framework for the description and design of genetic circuits of morphogenesis based on contact-dependent signaling and changes in …

C Lam, S Saluja, G Courcoubetis, D Yu… - ACS synthetic …, 2022 - ACS Publications
Synthetic development is a nascent field of research that uses the tools of synthetic biology
to design genetic programs directing cellular patterning and morphogenesis in higher …

Poissonian Cellular Potts Models Reveal Nonequilibrium Kinetics of Cell Sorting

R Belousov, S Savino, P Moghe, T Hiiragi, L Rondoni… - Physical Review Letters, 2024 - APS
Cellular Potts models are broadly applied across developmental biology and cancer
research. We overcome limitations of the traditional approach, which reinterprets a modified …