HuPho: the human phosphatase portal
S Liberti, F Sacco, A Calderone, L Perfetto… - The FEBS …, 2013 - Wiley Online Library
Phosphatases and kinases contribute to the regulation of protein phosphorylation
homeostasis in the cell. Phosphorylation is a key post‐translational modification underlying …
homeostasis in the cell. Phosphorylation is a key post‐translational modification underlying …
Virus-host interactions: from unbiased genetic screens to function
H Ramage, S Cherry - Annual Review of Virology, 2015 - annualreviews.org
Deciphering the many interactions that occur between a virus and host cell over the course
of infection is paramount to understanding mechanisms of pathogenesis and to the future …
of infection is paramount to understanding mechanisms of pathogenesis and to the future …
Integrating protein-protein interaction networks with phenotypes reveals signs of interactions
A major objective of systems biology is to organize molecular interactions as networks and
to characterize information flow within networks. We describe a computational framework to …
to characterize information flow within networks. We describe a computational framework to …
GenomeRNAi: a database for cell-based and in vivo RNAi phenotypes, 2013 update
EE Schmidt, O Pelz, S Buhlmann, G Kerr… - Nucleic acids …, 2013 - academic.oup.com
RNA interference (RNAi) represents a powerful method to systematically study loss-of-
function phenotypes on a large scale with a wide variety of biological assays, constituting a …
function phenotypes on a large scale with a wide variety of biological assays, constituting a …
Gene3D: a domain-based resource for comparative genomics, functional annotation and protein network analysis
Abstract Gene3D http://gene3d. biochem. ucl. ac. uk is a comprehensive database of protein
domain assignments for sequences from the major sequence databases. Domains are …
domain assignments for sequences from the major sequence databases. Domains are …
Human pangenome analysis of sequences missing from the reference genome reveals their widespread evolutionary, phenotypic, and functional roles
Z Wu, T Li, Z Jiang, J Zheng, Y Gu, Y Liu… - Nucleic Acids …, 2024 - academic.oup.com
Nonreference sequences (NRSs) are DNA sequences present in global populations but
absent in the current human reference genome. However, the extent and functional …
absent in the current human reference genome. However, the extent and functional …
Functional analysis of the putative integrin recognition motif on adeno-associated virus 9
S Shen, GE Berry, RMC Rivera, RY Cheung… - Journal of Biological …, 2015 - ASBMB
Adeno-associated viruses (AAVs) display a highly conserved NGR motif on the capsid
surface. Earlier studies have established this tripeptide motif as being essential for integrin …
surface. Earlier studies have established this tripeptide motif as being essential for integrin …
An RNA interference lethality screen of the human druggable genome to identify molecular vulnerabilities in epithelial ovarian cancer
Targeted therapies have been used to combat many tumor types; however, few have
effectively improved the overall survival in women with epithelial ovarian cancer, begging for …
effectively improved the overall survival in women with epithelial ovarian cancer, begging for …
Identifying synthetic lethal targets using CRISPR/Cas9 system
Synthetic lethality occurs when co-occurrence of two genetic events is unfavorable for the
survival of the cell or organism. The conventional approach of high throughput screening of …
survival of the cell or organism. The conventional approach of high throughput screening of …
Integrating the multiple dimensions of genomic and epigenomic landscapes of cancer
Advances in high-throughput, genome-wide profiling technologies have allowed for an
unprecedented view of the cancer genome landscape. Specifically, high-density microarrays …
unprecedented view of the cancer genome landscape. Specifically, high-density microarrays …