Quantitative and logic modelling of molecular and gene networks

N Le Novere - Nature Reviews Genetics, 2015 - nature.com
Behaviours of complex biomolecular systems are often irreducible to the elementary
properties of their individual components. Explanatory and predictive mathematical models …

[HTML][HTML] Measuring and modeling apoptosis in single cells

SL Spencer, PK Sorger - Cell, 2011 - cell.com
Cell death plays an essential role in the development of tissues and organisms, the etiology
of disease, and the responses of cells to therapeutic drugs. Here we review progress made …

Patient-specific Boolean models of signalling networks guide personalised treatments

A Montagud, J Béal, L Tobalina, P Traynard… - Elife, 2022 - elifesciences.org
Prostate cancer is the second most occurring cancer in men worldwide. To better
understand the mechanisms of tumorigenesis and possible treatment responses, we …

[HTML][HTML] Integrative modelling of the influence of MAPK network on cancer cell fate decision

L Grieco, L Calzone, I Bernard-Pierrot… - PLoS computational …, 2013 - journals.plos.org
The Mitogen-Activated Protein Kinase (MAPK) network consists of tightly interconnected
signalling pathways involved in diverse cellular processes, such as cell cycle, survival …

Diseases as network perturbations

A Del Sol, R Balling, L Hood, D Galas - Current opinion in biotechnology, 2010 - Elsevier
The tremendous amount of the data obtained from the study of complex biological systems
changes our view on the pathogenesis of human diseases. Instead of looking at individual …

PhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signalling

G Letort, A Montagud, G Stoll, R Heiland… - …, 2019 - academic.oup.com
Motivation Due to the complexity and heterogeneity of multicellular biological systems,
mathematical models that take into account cell signalling, cell population behaviour and the …

[HTML][HTML] SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools

C Chaouiya, D Bérenguier, SM Keating, A Naldi… - BMC systems …, 2013 - Springer
Background Qualitative frameworks, especially those based on the logical discrete
formalism, are increasingly used to model regulatory and signalling networks. A major …

Dynamic modelling of oestrogen signalling and cell fate in breast cancer cells

JJ Tyson, WT Baumann, C Chen, A Verdugo… - Nature Reviews …, 2011 - nature.com
Cancers of the breast and other tissues arise from aberrant decision-making by cells
regarding their survival or death, proliferation or quiescence, damage repair or bypass …

[HTML][HTML] Discovery of drug synergies in gastric cancer cells predicted by logical modeling

Å Flobak, A Baudot, E Remy… - PLoS computational …, 2015 - journals.plos.org
Discovery of efficient anti-cancer drug combinations is a major challenge, since
experimental testing of all possible combinations is clearly impossible. Recent efforts to …

[HTML][HTML] Toward A variable RBE for proton beam therapy

H Willers, A Allen, D Grosshans, SJ McMahon… - Radiotherapy and …, 2018 - Elsevier
In the clinic, proton beam therapy (PBT) is based on the use of a generic relative biological
effectiveness (RBE) of 1.1 compared to photons in human cancers and normal tissues …