Mass Spectrometry Structural Proteomics Enabled by Limited Proteolysis and Cross‐Linking
The exploration of protein structure and function stands at the forefront of life science and
represents an ever‐expanding focus in the development of proteomics. As mass …
represents an ever‐expanding focus in the development of proteomics. As mass …
[HTML][HTML] Mitochondrial aconitase and its contribution to the pathogenesis of neurodegenerative diseases
V Padalko, F Posnik, M Adamczyk - International Journal of Molecular …, 2024 - mdpi.com
This survey reviews modern ideas on the structure and functions of mitochondrial and
cytosolic aconitase isoenzymes in eukaryotes. Cumulative experimental evidence about …
cytosolic aconitase isoenzymes in eukaryotes. Cumulative experimental evidence about …
Evaluating forest depletion and structural change effects on environmental sustainability in Pakistan: Through the lens of the load capacity factor
The pace of species extinction and deforestation has increased dramatically due to the
substantial increase in global environmental degradation. This trend is approaching the …
substantial increase in global environmental degradation. This trend is approaching the …
FLiPPR: A Processor for Limited Proteolysis (LiP) Mass Spectrometry Data Sets Built on FragPipe
E Manriquez-Sandoval, J Brewer, G Lule… - Journal of Proteome …, 2024 - ACS Publications
Here, we present FLiPPR, or FragPipe LiP (limited proteolysis) Processor, a tool that
facilitates the analysis of data from limited proteolysis mass spectrometry (LiP-MS) …
facilitates the analysis of data from limited proteolysis mass spectrometry (LiP-MS) …
Regulatory Mechanisms of Aging Through the Nutritional and Metabolic Control of Amino Acid Signaling in Model Organisms
F Obata, M Miura - Annual Review of Genetics, 2024 - annualreviews.org
Life activities are supported by the intricate metabolic network that is fueled by nutrients.
Nutritional and genetic studies in model organisms have determined that dietary restriction …
Nutritional and genetic studies in model organisms have determined that dietary restriction …
Network modeling and topology of aging
L Feng, D Yang, S Wu, C Xue, M Sang, X Liu, J Che… - Physics Reports, 2025 - Elsevier
Aging is a universal process of age-dependent physiological and functional declines that
are strongly associated with human diseases. Despite extensive studies of the molecular …
are strongly associated with human diseases. Despite extensive studies of the molecular …
Exploring protein conformations with limited proteolysis coupled to mass spectrometry
C Van Leene, L Van Moortel, K De Bosscher… - Trends in Biochemical …, 2024 - cell.com
Limited proteolysis coupled to mass spectrometry (LiP-MS) has emerged as a powerful
proteomic tool for studying protein conformations. Since its introduction in 2014, LiP-MS has …
proteomic tool for studying protein conformations. Since its introduction in 2014, LiP-MS has …
Proteome-wide assessment of protein structural perturbations under high pressure
HM Moran, E Manriquez-Sandoval, P Sharma… - PRX Life, 2024 - APS
One of the planet's more understudied ecosystems is the deep biosphere, where organisms
can experience high hydrostatic pressures (30–110 MPa); yet, by current estimates, these …
can experience high hydrostatic pressures (30–110 MPa); yet, by current estimates, these …
Multidimensional proteomics identifies molecular trajectories of cellular aging and rejuvenation
The declining capacity of cells to maintain a functional proteome is a major driver of cellular
dysfunction and decreased fitness in aging. Here we assess the impact of aging on multiple …
dysfunction and decreased fitness in aging. Here we assess the impact of aging on multiple …
Agglomeration: when folded proteins clump together
ML Romero-Romero, H Garcia-Seisdedos - Biophysical reviews, 2023 - Springer
Protein self-association is a widespread phenomenon that results in the formation of
multimeric protein structures with critical roles in cellular processes. Protein self-association …
multimeric protein structures with critical roles in cellular processes. Protein self-association …