Mass Spectrometry Structural Proteomics Enabled by Limited Proteolysis and Cross‐Linking

H Lu, Z Zhu, L Fields, H Zhang… - Mass Spectrometry …, 2024 - Wiley Online Library
The exploration of protein structure and function stands at the forefront of life science and
represents an ever‐expanding focus in the development of proteomics. As mass …

[HTML][HTML] Mitochondrial aconitase and its contribution to the pathogenesis of neurodegenerative diseases

V Padalko, F Posnik, M Adamczyk - International Journal of Molecular …, 2024 - mdpi.com
This survey reviews modern ideas on the structure and functions of mitochondrial and
cytosolic aconitase isoenzymes in eukaryotes. Cumulative experimental evidence about …

Evaluating forest depletion and structural change effects on environmental sustainability in Pakistan: Through the lens of the load capacity factor

B Lin, S Ullah - Journal of Environmental Management, 2024 - Elsevier
The pace of species extinction and deforestation has increased dramatically due to the
substantial increase in global environmental degradation. This trend is approaching the …

FLiPPR: A Processor for Limited Proteolysis (LiP) Mass Spectrometry Data Sets Built on FragPipe

E Manriquez-Sandoval, J Brewer, G Lule… - Journal of Proteome …, 2024 - ACS Publications
Here, we present FLiPPR, or FragPipe LiP (limited proteolysis) Processor, a tool that
facilitates the analysis of data from limited proteolysis mass spectrometry (LiP-MS) …

Regulatory Mechanisms of Aging Through the Nutritional and Metabolic Control of Amino Acid Signaling in Model Organisms

F Obata, M Miura - Annual Review of Genetics, 2024 - annualreviews.org
Life activities are supported by the intricate metabolic network that is fueled by nutrients.
Nutritional and genetic studies in model organisms have determined that dietary restriction …

Network modeling and topology of aging

L Feng, D Yang, S Wu, C Xue, M Sang, X Liu, J Che… - Physics Reports, 2025 - Elsevier
Aging is a universal process of age-dependent physiological and functional declines that
are strongly associated with human diseases. Despite extensive studies of the molecular …

Exploring protein conformations with limited proteolysis coupled to mass spectrometry

C Van Leene, L Van Moortel, K De Bosscher… - Trends in Biochemical …, 2024 - cell.com
Limited proteolysis coupled to mass spectrometry (LiP-MS) has emerged as a powerful
proteomic tool for studying protein conformations. Since its introduction in 2014, LiP-MS has …

Proteome-wide assessment of protein structural perturbations under high pressure

HM Moran, E Manriquez-Sandoval, P Sharma… - PRX Life, 2024 - APS
One of the planet's more understudied ecosystems is the deep biosphere, where organisms
can experience high hydrostatic pressures (30–110 MPa); yet, by current estimates, these …

Multidimensional proteomics identifies molecular trajectories of cellular aging and rejuvenation

M Leutert, J Armstrong, AR Ollodart, K Hess, M Muir… - bioRxiv, 2023 - biorxiv.org
The declining capacity of cells to maintain a functional proteome is a major driver of cellular
dysfunction and decreased fitness in aging. Here we assess the impact of aging on multiple …

Agglomeration: when folded proteins clump together

ML Romero-Romero, H Garcia-Seisdedos - Biophysical reviews, 2023 - Springer
Protein self-association is a widespread phenomenon that results in the formation of
multimeric protein structures with critical roles in cellular processes. Protein self-association …