Genome evolution in filamentous plant pathogens: why bigger can be better
S Raffaele, S Kamoun - Nature Reviews Microbiology, 2012 - nature.com
Many species of fungi and oomycetes are plant pathogens of great economic importance.
Over the past 7 years, the genomes of more than 30 of these filamentous plant pathogens …
Over the past 7 years, the genomes of more than 30 of these filamentous plant pathogens …
Colletotrichum: species complexes, lifestyle, and peculiarities of some sources of genetic variability
LL da Silva, HLA Moreno, HLN Correia… - Applied microbiology …, 2020 - Springer
The genus Colletotrichum comprises species with different lifestyles but is mainly known for
phytopathogenic species that infect crops of agronomic relevance causing considerable …
phytopathogenic species that infect crops of agronomic relevance causing considerable …
Widespread polycistronic transcripts in fungi revealed by single-molecule mRNA sequencing
Genes in prokaryotic genomes are often arranged into clusters and co-transcribed into
polycistronic RNAs. Isolated examples of polycistronic RNAs were also reported in some …
polycistronic RNAs. Isolated examples of polycistronic RNAs were also reported in some …
Repeat‐induced point mutation and other genome defense mechanisms in fungi
E Gladyshev - The fungal kingdom, 2017 - Wiley Online Library
Mobile DNA, comprising both active and decaying copies of transposable elements (TEs), is
present in nearly all living organisms. Although fungal genomes tend to be significantly …
present in nearly all living organisms. Although fungal genomes tend to be significantly …
Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles
R Castanera, L López-Varas, A Borgognone… - PLoS …, 2016 - journals.plos.org
Transposable elements (TEs) are exceptional contributors to eukaryotic genome diversity.
Their ubiquitous presence impacts the genomes of nearly all species and mediates genome …
Their ubiquitous presence impacts the genomes of nearly all species and mediates genome …
Genome Sequencing and Comparative Genomics of the Broad Host-Range Pathogen Rhizoctonia solani AG8
Rhizoctonia solani is a soil-borne basidiomycete fungus with a necrotrophic lifestyle which is
classified into fourteen reproductively incompatible anastomosis groups (AGs). One of these …
classified into fourteen reproductively incompatible anastomosis groups (AGs). One of these …
Genome comparison of barley and maize smut fungi reveals targeted loss of RNA silencing components and species-specific presence of transposable elements
Ustilago hordei is a biotrophic parasite of barley (Hordeum vulgare). After seedling infection,
the fungus persists in the plant until head emergence when fungal spores develop and are …
the fungus persists in the plant until head emergence when fungal spores develop and are …
Comparative genomics of the major fungal agents of human and animal Sporotrichosis: Sporothrix schenckii and Sporothrix brasiliensis
MM Teixeira, LGP de Almeida, P Kubitschek-Barreira… - BMC genomics, 2014 - Springer
Abstract Background The fungal genus Sporothrix includes at least four human pathogenic
species. One of these species, S. brasiliensis, is the causal agent of a major ongoing …
species. One of these species, S. brasiliensis, is the causal agent of a major ongoing …
A tale of genome compartmentalization: the evolution of virulence clusters in smut fungi
JY Dutheil, G Mannhaupt, G Schweizer… - Genome biology and …, 2016 - academic.oup.com
Smut fungi are plant pathogens mostly parasitizing wild species of grasses as well as
domesticated cereal crops. Genome analysis of several smut fungi including Ustilago …
domesticated cereal crops. Genome analysis of several smut fungi including Ustilago …
OcculterCut: a comprehensive survey of AT-rich regions in fungal genomes
We present a novel method to measure the local GC-content bias in genomes and a survey
of published fungal species. The method, enacted as “OcculterCut”(https://sourceforge …
of published fungal species. The method, enacted as “OcculterCut”(https://sourceforge …