Exploring the artificial intelligence and machine learning models in the context of drug design difficulties and future potential for the pharmaceutical sectors

PN Shiammala, NKB Duraimutharasan, B Vaseeharan… - Methods, 2023 - Elsevier
Artificial intelligence (AI), particularly deep learning as a subcategory of AI, provides
opportunities to discover and develop innovative drugs. The use of AI in drug discovery is …

Multimodal deep learning approaches for precision oncology: a comprehensive review

H Yang, M Yang, J Chen, G Yao, Q Zou… - Briefings in …, 2025 - academic.oup.com
The burgeoning accumulation of large-scale biomedical data in oncology, alongside
significant strides in deep learning (DL) technologies, has established multimodal DL (MDL) …

Knowledge graph convolutional network with heuristic search for drug repositioning

X Du, X Sun, M Li - Journal of Chemical Information and Modeling, 2024 - ACS Publications
Drug repositioning is a strategy of repurposing approved drugs for treating new indications,
which can accelerate the drug discovery process, reduce development costs, and lower the …

DRGCL: Drug Repositioning via Semantic-enriched Graph Contrastive Learning

X Jia, X Sun, K Wang, M Li - IEEE Journal of Biomedical and …, 2024 - ieeexplore.ieee.org
Drug repositioning greatly reduces drug development costs and time by discovering new
indications for existing drugs. With the development of technology and large-scale biological …

GraphCL-DTA: a graph contrastive learning with molecular semantics for drug-target binding affinity prediction

X Yang, G Yang, J Chu - IEEE Journal of Biomedical and …, 2024 - ieeexplore.ieee.org
Drug-target binding affinity prediction plays an important role in the early stages of drug
discovery, which can infer the strength of interactions between new drugs and new targets …

A comprehensive review of protein-centric predictors for biomolecular interactions: from proteins to nucleic acids and beyond

P Jia, F Zhang, C Wu, M Li - Briefings in Bioinformatics, 2024 - academic.oup.com
Proteins interact with diverse ligands to perform a large number of biological functions, such
as gene expression and signal transduction. Accurate identification of these protein–ligand …

DualFluidNet: An attention-based dual-pipeline network for fluid simulation

Y Chen, S Zheng, M Jin, Y Chang, N Wang - Neural Networks, 2024 - Elsevier
Fluid motion can be considered as a point cloud transformation when using the SPH
method. Compared to traditional numerical analysis methods, using machine learning …

[HTML][HTML] Incorporating Water Molecules into Highly Accurate Binding Affinity Prediction for Proteins and Ligands

D Zhang, Q Meng, F Guo - International Journal of Molecular Sciences, 2024 - mdpi.com
In the binding process between proteins and ligand molecules, water molecules play a
pivotal role by forming hydrogen bonds that enable proteins and ligand molecules to bind …

A comprehensive review of the recent advances on predicting drug-target affinity based on deep learning

X Zeng, SJ Li, SQ Lv, ML Wen, Y Li - Frontiers in Pharmacology, 2024 - frontiersin.org
Accurate calculation of drug-target affinity (DTA) is crucial for various applications in the
pharmaceutical industry, including drug screening, design, and repurposing. However …

[HTML][HTML] DeepTGIN: a novel hybrid multimodal approach using transformers and graph isomorphism networks for protein-ligand binding affinity prediction

G Wang, H Zhang, M Shao, Y Feng… - Journal of …, 2024 - pmc.ncbi.nlm.nih.gov
Predicting protein-ligand binding affinity is essential for understanding protein-ligand
interactions and advancing drug discovery. Recent research has demonstrated the …