Neuronal arithmetic

RA Silver - Nature Reviews Neuroscience, 2010 - nature.com
The vast computational power of the brain has traditionally been viewed as arising from the
complex connectivity of neural networks, in which an individual neuron acts as a simple …

Neuron tracing in perspective

E Meijering - Cytometry Part A, 2010 - Wiley Online Library
The study of the structure and function of neuronal cells and networks is of crucial
importance in the endeavor to understand how the brain works. A key component in this …

BrainNet Viewer: a network visualization tool for human brain connectomics

M Xia, J Wang, Y He - PloS one, 2013 - journals.plos.org
The human brain is a complex system whose topological organization can be represented
using connectomics. Recent studies have shown that human connectomes can be …

[HTML][HTML] Systematic integration of structural and functional data into multi-scale models of mouse primary visual cortex

YN Billeh, B Cai, SL Gratiy, K Dai, R Iyer, NW Gouwens… - Neuron, 2020 - cell.com
Structural rules underlying functional properties of cortical circuits are poorly understood. To
explore these rules systematically, we integrated information from extensive literature …

Whole-body tissue stabilization and selective extractions via tissue-hydrogel hybrids for high-resolution intact circuit mapping and phenotyping

JB Treweek, KY Chan, NC Flytzanis, B Yang… - Nature protocols, 2015 - nature.com
To facilitate fine-scale phenotyping of whole specimens, we describe here a set of tissue
fixation-embedding, detergent-clearing and staining protocols that can be used to transform …

PyNN: a common interface for neuronal network simulators

AP Davison, D Brüderle, JM Eppler… - Frontiers in …, 2009 - frontiersin.org
Computational neuroscience has produced a diversity of software for simulations of
networks of spiking neurons, with both negative and positive consequences. On the one …

NeuroMorpho. Org: a central resource for neuronal morphologies

GA Ascoli, DE Donohue, M Halavi - Journal of Neuroscience, 2007 - Soc Neuroscience
The structure of dendrites and axons plays fundamental roles in synaptic integration and
network connectivity. Synergistic advances in neurobiology (eg, intracellular injections …

Interneuronal mechanisms of hippocampal theta oscillations in a full-scale model of the rodent CA1 circuit

MJ Bezaire, I Raikov, K Burk, D Vyas, I Soltesz - Elife, 2016 - elifesciences.org
The hippocampal theta rhythm plays important roles in information processing; however, the
mechanisms of its generation are not well understood. We developed a data-driven …

The cerebellar microcircuit as an adaptive filter: experimental and computational evidence

P Dean, J Porrill, CF Ekerot, H Jörntell - Nature Reviews Neuroscience, 2010 - nature.com
Initial investigations of the cerebellar microcircuit inspired the Marr–Albus theoretical
framework of cerebellar function. We review recent developments in the experimental …

NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail

P Gleeson, S Crook, RC Cannon… - PLoS computational …, 2010 - journals.plos.org
Biologically detailed single neuron and network models are important for understanding
how ion channels, synapses and anatomical connectivity underlie the complex electrical …