[HTML][HTML] A survey of topological machine learning methods
The last decade saw an enormous boost in the field of computational topology: methods and
concepts from algebraic and differential topology, formerly confined to the realm of pure …
concepts from algebraic and differential topology, formerly confined to the realm of pure …
[HTML][HTML] Computer-aided multi-objective optimization in small molecule discovery
Molecular discovery is a multi-objective optimization problem that requires identifying a
molecule or set of molecules that balance multiple, often competing, properties. Multi …
molecule or set of molecules that balance multiple, often competing, properties. Multi …
Neural fields in visual computing and beyond
Recent advances in machine learning have led to increased interest in solving visual
computing problems using methods that employ coordinate‐based neural networks. These …
computing problems using methods that employ coordinate‐based neural networks. These …
[HTML][HTML] PoseBusters: AI-based docking methods fail to generate physically valid poses or generalise to novel sequences
The last few years have seen the development of numerous deep learning-based protein–
ligand docking methods. They offer huge promise in terms of speed and accuracy. However …
ligand docking methods. They offer huge promise in terms of speed and accuracy. However …
The landscape of tolerated genetic variation in humans and primates
H Gao, T Hamp, J Ede, JG Schraiber, J McRae… - Science, 2023 - science.org
Personalized genome sequencing has revealed millions of genetic differences between
individuals, but our understanding of their clinical relevance remains largely incomplete. To …
individuals, but our understanding of their clinical relevance remains largely incomplete. To …
Exploring deep neural networks via layer-peeled model: Minority collapse in imbalanced training
In this paper, we introduce the Layer-Peeled Model, a nonconvex, yet analytically tractable,
optimization program, in a quest to better understand deep neural networks that are trained …
optimization program, in a quest to better understand deep neural networks that are trained …
High-dimensional limit theorems for sgd: Effective dynamics and critical scaling
G Ben Arous, R Gheissari… - Advances in Neural …, 2022 - proceedings.neurips.cc
We study the scaling limits of stochastic gradient descent (SGD) with constant step-size in
the high-dimensional regime. We prove limit theorems for the trajectories of summary …
the high-dimensional regime. We prove limit theorems for the trajectories of summary …
State‐of‐the‐Art in the Architecture, Methods and Applications of StyleGAN
Abstract Generative Adversarial Networks (GANs) have established themselves as a
prevalent approach to image synthesis. Of these, StyleGAN offers a fascinating case study …
prevalent approach to image synthesis. Of these, StyleGAN offers a fascinating case study …
Detection and classification of cancer in whole slide breast histopathology images using deep convolutional networks
Generalizability of algorithms for binary cancer vs. no cancer classification is unknown for
clinically more significant multi-class scenarios where intermediate categories have different …
clinically more significant multi-class scenarios where intermediate categories have different …
[HTML][HTML] Scaffold-based molecular design with a graph generative model
Searching for new molecules in areas like drug discovery often starts from the core
structures of known molecules. Such a method has called for a strategy of designing …
structures of known molecules. Such a method has called for a strategy of designing …