Deep learning and its applications in biomedicine

C Cao, F Liu, H Tan, D Song, W Shu… - Genomics …, 2018 - academic.oup.com
Advances in biological and medical technologies have been providing us explosive
volumes of biological and physiological data, such as medical images …

Deep learning for genomics: A concise overview

T Yue, Y Wang, L Zhang, C Gu, H Xue, W Wang… - arXiv preprint arXiv …, 2018 - arxiv.org
Advancements in genomic research such as high-throughput sequencing techniques have
driven modern genomic studies into" big data" disciplines. This data explosion is constantly …

DeepChrome: deep-learning for predicting gene expression from histone modifications

R Singh, J Lanchantin, G Robins, Y Qi - Bioinformatics, 2016 - academic.oup.com
Motivation Histone modifications are among the most important factors that control gene
regulation. Computational methods that predict gene expression from histone modification …

[HTML][HTML] GHS-NET a generic hybridized shallow neural network for multi-label biomedical text classification

MA Ibrahim, MUG Khan, F Mehmood, MN Asim… - Journal of biomedical …, 2021 - Elsevier
Exponential growth of biomedical literature and clinical data demands more robust yet
precise computational methodologies to extract useful insights from biomedical literature …

Different methods, techniques and their limitations in protein structure prediction: A review

V Bongirwar, AS Mokhade - Progress in Biophysics and Molecular Biology, 2022 - Elsevier
Because of the increase in different types of diseases in human habitats, demands for
designing various types of drugs are also increasing. Protein and its structure play a very …

EnzyNet: enzyme classification using 3D convolutional neural networks on spatial representation

A Amidi, S Amidi, D Vlachakis, V Megalooikonomou… - PeerJ, 2018 - peerj.com
During the past decade, with the significant progress of computational power as well as ever-
rising data availability, deep learning techniques became increasingly popular due to their …

Convolutional neural networks learning from respiratory data

D Perna - … IEEE International Conference on Bioinformatics and …, 2018 - ieeexplore.ieee.org
Convolutional neural networks (CNNs) have been successfully applied in a wide variety of
fields, from image processing to genomic sequencing. In the context of biomedical data, we …

AptaNet as a deep learning approach for aptamer–protein interaction prediction

N Emami, R Ferdousi - Scientific reports, 2021 - nature.com
Aptamers are short oligonucleotides (DNA/RNA) or peptide molecules that can selectively
bind to their specific targets with high specificity and affinity. As a powerful new class of …

Deep learning for mining protein data

Q Shi, W Chen, S Huang, Y Wang… - Briefings in …, 2021 - academic.oup.com
The recent emergence of deep learning to characterize complex patterns of protein big data
reveals its potential to address the classic challenges in the field of protein data mining …

Attend and predict: Understanding gene regulation by selective attention on chromatin

R Singh, J Lanchantin, A Sekhon… - Advances in neural …, 2017 - proceedings.neurips.cc
The past decade has seen a revolution in genomic technologies that enabled a flood of
genome-wide profiling of chromatin marks. Recent literature tried to understand gene …