Nanopore sequencing-based genome assembly and evolutionary genomics of circum-basmati rice
Background The circum-basmati group of cultivated Asian rice (Oryza sativa) contains many
iconic varieties and is widespread in the Indian subcontinent. Despite its economic and …
iconic varieties and is widespread in the Indian subcontinent. Despite its economic and …
Hybridization, missing wild ancestors and the domestication of cultivated diploid bananas
Hybridization and introgressions are important evolutionary forces in plants. They contribute
to the domestication of many species, including understudied clonal crops. Here, we …
to the domestication of many species, including understudied clonal crops. Here, we …
Chromosome reciprocal translocations have accompanied subspecies evolution in bananas
Chromosome rearrangements and the way that they impact genetic differentiation and
speciation have long raised questions from evolutionary biologists. They are also a major …
speciation have long raised questions from evolutionary biologists. They are also a major …
Three founding ancestral genomes involved in the origin of sugarcane
Abstract Background and Aims Modern sugarcane cultivars (Saccharum spp.) are high
polyploids, aneuploids (2 n=~ 12 x=~ 120) derived from interspecific hybridizations between …
polyploids, aneuploids (2 n=~ 12 x=~ 120) derived from interspecific hybridizations between …
Development and validation of diagnostic SNP markers for quality control genotyping in a collection of four rice (Oryza) species
AC Gouda, ML Warburton, GL Djedatin, SB Kpeki… - Scientific Reports, 2021 - nature.com
Morphological identification of closely related rice species, particularly those in the Oryza AA
genome group, presents major challenges and often results in cases of misidentification …
genome group, presents major challenges and often results in cases of misidentification …
A transposon insertion in the promoter of OsUBC12 enhances cold tolerance during japonica rice germination
C Zhang, H Wang, X Tian, X Lin, Y Han, Z Han… - Nature …, 2024 - nature.com
Low-temperature germination (LTG) is an important agronomic trait for rice (Oryza sativa).
Japonica rice generally has greater capacity for germination at low temperatures than the …
Japonica rice generally has greater capacity for germination at low temperatures than the …
Historical routes for diversification of domesticated chickpea inferred from landrace genomics
AA Igolkina, NV Noujdina… - Molecular Biology …, 2023 - academic.oup.com
According to archaeological records, chickpea (Cicer arietinum) was first domesticated in
the Fertile Crescent about 10,000 years BP. Its subsequent diversification in Middle East …
the Fertile Crescent about 10,000 years BP. Its subsequent diversification in Middle East …
Genetic bases of resistance to the rice hoja blanca disease deciphered by a quantitative trait locus approach
A Silva, ME Montoya, C Quintero… - G3: Genes …, 2023 - academic.oup.com
Rice hoja blanca (RHB) is one of the most serious diseases in rice-growing areas in tropical
Americas. Its causal agent is RHB virus (RHBV), transmitted by the planthopper Tagosodes …
Americas. Its causal agent is RHB virus (RHBV), transmitted by the planthopper Tagosodes …
Genomic atlases of introgression and differentiation reveal breeding footprints in Chinese cultivated rice
Z Chen, X Li, H Lu, Q Gao, H Du, H Peng, P Qin… - Journal of Genetics and …, 2020 - Elsevier
The long history of cultivation and breeding has left a variety of footprints in the genomes of
Asian cultivated rice (Oryza sativa L.). In this study, we focus on two types of genomic …
Asian cultivated rice (Oryza sativa L.). In this study, we focus on two types of genomic …
On the inference of complex phylogenetic networks by Markov Chain Monte-Carlo
For various species, high quality sequences and complete genomes are nowadays
available for many individuals. This makes data analysis challenging, as methods need not …
available for many individuals. This makes data analysis challenging, as methods need not …