Lempel–Ziv factorization powered by space efficient suffix trees

J Fischer, TI, D Köppl, K Sadakane - Algorithmica, 2018 - Springer
We show that both the Lempel–Ziv-77 and the Lempel–Ziv-78 factorization of a text of length
n on an integer alphabet of size σ σ can be computed in O\left (n\right) O n time with either …

Hypersuccinct Trees--New universal tree source codes for optimal compressed tree data structures and range minima

JI Munro, PK Nicholson, LS Benkner, S Wild - arXiv preprint arXiv …, 2021 - arxiv.org
We present a new universal source code for distributions of unlabeled binary and ordinal
trees that achieves optimal compression to within lower order terms for all tree sources …

[PDF][PDF] Exploring regular structures in strings

D Köppl - 2018 - koeppl.github.io
This thesis is dedicated to string processing algorithms and to combinatorics on words. With
respect to the former, we devise Lempel-Ziv (LZ) factorization and sparse suffix sorting …

[PDF][PDF] Algorithms and Data Structures for Sequence Analysis in the Pan-Genomic Era.

D Valenzuela - 2017 - helda.helsinki.fi
Abstract The advent of Next-Generation Sequencing brought new challenges for biological
sequence analysis: larger volumes of sequencing data, a proliferation of research projects …

[PDF][PDF] Hypersuccinct Trees–New universal tree source codes for optimal compressed tree data structures

JI Munro, PK Nicholson, LS Benkner, S Wild - CoRR, 2021 - eti.uni-siegen.de
We present a new universal source code for unlabeled binary and ordinal trees that
achieves asymptotically optimal compression for all tree sources covered by existing …