The Syntrophy hypothesis for the origin of eukaryotes revisited

P López-García, D Moreira - Nature microbiology, 2020 - nature.com
The discovery of Asgard archaea, phylogenetically closer to eukaryotes than other archaea,
together with improved knowledge of microbial ecology, impose new constraints on …

LTR-retrotransposons in plants: Engines of evolution

L Galindo-González, C Mhiri, MK Deyholos… - Gene, 2017 - Elsevier
LTR retrotransposons are the most abundant group of transposable elements (TEs) in
plants. These elements can fall inside or close to genes, and therefore influence their …

Mobile group II introns as ancestral eukaryotic elements

O Novikova, M Belfort - Trends in Genetics, 2017 - cell.com
The duality of group II introns, capable of carrying out both self-splicing and retromobility
reactions, is hypothesized to have played a profound role in the evolution of eukaryotes …

[HTML][HTML] Organellar maturases: A window into the evolution of the spliceosome

C Schmitz-Linneweber, MK Lampe, LD Sultan… - … et Biophysica Acta (BBA …, 2015 - Elsevier
During the evolution of eukaryotic genomes, many genes have been interrupted by
intervening sequences (introns) that must be removed post-transcriptionally from RNA …

Introns: the “dark matter” of the eukaryotic genome

KN Girardini, AM Olthof, RN Kanadia - Frontiers in Genetics, 2023 - frontiersin.org
The emergence of introns was a significant evolutionary leap that is a major distinguishing
feature between prokaryotic and eukaryotic genomes. While historically introns were …

Quantum chemical studies of nucleic acids: can we construct a bridge to the RNA structural biology and bioinformatics communities?

J Sponer, JE Sponer, AI Petrov… - The journal of physical …, 2010 - ACS Publications
In this feature article, we provide a side-by-side introduction for two research fields: quantum
chemical calculations of molecular interaction in nucleic acids and RNA structural …

Domestication of self-splicing introns during eukaryogenesis: the rise of the complex spliceosomal machinery

J Vosseberg, B Snel - Biology Direct, 2017 - Springer
The spliceosome is a eukaryote-specific complex that is essential for the removal of introns
from pre-mRNA. It consists of five small nuclear RNAs (snRNAs) and over a hundred …

An overview of the introns-first theory

D Penny, MP Hoeppner, AM Poole… - Journal of molecular …, 2009 - Springer
We review the introns-first hypothesis a decade after it was first proposed. It is that exons
emerged from non-coding regions interspersed between RNA genes in an early RNA world …

Nonsense-Mediated Decay Enables Intron Gain in Drosophila

A Farlow, E Meduri, M Dolezal, L Hua… - PLoS genetics, 2010 - journals.plos.org
Intron number varies considerably among genomes, but despite their fundamental
importance, the mutational mechanisms and evolutionary processes underlying the …

Convergent evolution of twintron-like configurations: one is never enough

M Hafez, G Hausner - RNA biology, 2015 - Taylor & Francis
Introns inserted within introns are commonly referred to as twintrons, however the original
definition for twintron implied that splicing of the external member of the twintron could only …