Phenotypic Plasticity of Staphylococcus aureus in Liquid Medium Containing Vancomycin

M Rong, X Zheng, M Ye, J Bai, X Xie, Y Jin… - Frontiers in …, 2019 - frontiersin.org
Phenotypic plasticity enables individuals to develop different phenotypes in a changing
environment and promotes adaptive evolution. Genome-wide association study (GWAS) …

Parallelizing epistasis detection in GWAS on FPGA and GPU-accelerated computing systems

J González-Domínguez, L Wienbrandt… - … ACM transactions on …, 2015 - ieeexplore.ieee.org
High-throughput genotyping technologies (such as SNP-arrays) allow the rapid collection of
up to a few million genetic markers of an individual. Detecting epistasis (based on 2-SNP …

Performance of epistasis detection methods in semi-simulated GWAS

C Chatelain, G Durand, V Thuillier, F Augé - BMC bioinformatics, 2018 - Springer
Background Part of the missing heritability in Genome Wide Association Studies (GWAS) is
expected to be explained by interactions between genetic variants, also called epistasis …

Functional Mapping of Phenotypic Plasticity of Staphylococcus aureus Under Vancomycin Pressure

D Yang, X Zheng, L Jiang, M Ye, X He, Y Jin… - Frontiers in …, 2021 - frontiersin.org
Phenotypic plasticity is the exhibition of various phenotypic traits produced by a single
genotype in response to environmental changes, enabling organisms to adapt to …

Multivariate Spearman's for Aggregating Ranks Using Copulas

J Bedő, CS Ong - Journal of Machine Learning Research, 2016 - jmlr.org
We study the problem of rank aggregation: given a set of ranked lists, we want to form a
consensus ranking. Furthermore, we consider the case of extreme lists: ie, only the rank of …

Spatial correlations exploitation based on nonlocal voxel-wise GWAS for biomarker detection of AD

M Huang, C Deng, Y Yu, T Lian, W Yang, Q Feng… - NeuroImage: Clinical, 2019 - Elsevier
Potential biomarker detection is a crucial area of study for the prediction, diagnosis, and
monitoring of Alzheimer's disease (AD). The voxelwise genome-wide association study …

Collateral sensitivity to β-lactam drugs in drug-resistant tuberculosis is driven by the transcriptional wiring of BlaI operon genes

AS Trigos, BW Goudey, J Bedő, TC Conway, NG Faux… - Msphere, 2021 - Am Soc Microbiol
The evolution of resistance to one antimicrobial can result in enhanced sensitivity to another,
known as “collateral sensitivity.” This underexplored phenomenon opens new therapeutic …

[图书][B] Deep Neural Networks and Embedding Methods in Drugs Interactions Analysis

P Liu - 2019 - search.proquest.com
Deep Neural Networks and Embedding Methods in Drugs Interactions Analysis Page 1 Deep
Neural Networks and Embedding Methods in Drugs Interactions Analysis LIU, Pengfei A Thesis …

[PDF][PDF] Discovering Epistatic Interaction Features via High Performance Machine Learning

Q Wang - 2021 - minerva-access.unimelb.edu.au
Abstract GENOME-wide Association Studies (GWAS) are increasingly popular in screening
the genetic architecture of human genome. For a typical GWAS study, half a million genetic …

[PDF][PDF] A Hybrid Distributed Framework for SNP Selections

P Liu, S Li, W Yi, KS Leung - Proceedings of the International …, 2016 - shuaili8.github.io
With the development of next generation sequencing technology, researchers are able to
obtain extremely high-dimensional data. However, only a fraction of the data is related to …