Synthetic microbiology in sustainability applications

EM Jones, JP Marken, PA Silver - Nature Reviews Microbiology, 2024 - nature.com
Microorganisms are a promising means to address many societal sustainability challenges
owing to their ability to thrive in diverse environments and interface with the microscale …

SEVA 4.0: an update of the Standard European Vector Architecture database for advanced analysis and programming of bacterial phenotypes

E Martínez-García, S Fraile, E Algar… - Nucleic Acids …, 2023 - academic.oup.com
Abstract The SEVA platform (https://seva-plasmids. com) was launched one decade ago,
both as a database (DB) and as a physical repository of plasmid vectors for genetic analysis …

CRISPR-associated transposase for targeted mutagenesis in diverse proteobacteria

L Trujillo Rodríguez, AJ Ellington, CR Reisch… - ACS Synthetic …, 2023 - ACS Publications
Genome editing tools, through the disruption of an organism's native genetic material or the
introduction of non-native DNA, facilitate functional investigations to link genotypes to …

Accelerating Genetic Sensor Development, Scale-up, and Deployment Using Synthetic Biology

SHN Joshi, C Jenkins, D Ulaeto… - BioDesign …, 2024 - spj.science.org
Living cells are exquisitely tuned to sense and respond to changes in their environment.
Repurposing these systems to create engineered biosensors has seen growing interest in …

Mercury bioremediation by engineered Pseudomonas putida KT2440 with adaptationally optimized biosecurity circuit

Y Xue, T Qiu, Z Sun, F Liu, B Yu - Environmental Microbiology, 2022 - Wiley Online Library
Hazardous materials, such as heavy metals, are the major sources of health risk. Using
genetically modified organisms (GMOs) to dispose heavy metals has the advantages of …

Blue valorization of lignin-derived monomers via reprogramming marine bacterium Roseovarius nubinhibens

Y Wei, SG Wang, PF Xia - Applied and Environmental …, 2024 - journals.asm.org
Biological valorization of lignin, the second most abundant biopolymer on Earth, is an
indispensable sector to build a circular economy and net-zero future. However, lignin is …

ORBIT for E. coli: kilobase-scale oligonucleotide recombineering at high throughput and high efficiency

SH Saunders, AM Ahmed - Nucleic Acids Research, 2024 - academic.oup.com
Microbiology and synthetic biology depend on reverse genetic approaches to manipulate
bacterial genomes; however, existing methods require molecular biology to generate …

Plasmids for controlled and tunable high-level expression in E. coli

LA Schuster, CR Reisch - Applied and Environmental …, 2022 - Am Soc Microbiol
Controlled gene expression is crucial for engineering bacteria for basic and applied
research. Inducible systems enable tight regulation of expression, wherein a small-molecule …

The pGinger family of expression plasmids

AN Pearson, MG Thompson, LD Kirkpatrick… - Microbiology …, 2023 - Am Soc Microbiol
The pGinger suite of expression plasmids comprises 43 plasmids that will enable precise
constitutive and inducible gene expression in a wide range of Gram-negative bacterial …

Toolbox of Characterized Genetic Parts for Staphylococcus aureus

SN Rondthaler, B Sarker, N Howitz, I Shah… - ACS Synthetic …, 2023 - ACS Publications
Staphylococcus aureus is an important clinical bacterium prevalent in human-associated
microbiomes and the cause of many diseases. However, S. aureus has been intractable to …