[HTML][HTML] How does RNA fold dynamically?
Recent advances in interrogating RNA folding dynamics have shown the classical model of
RNA folding to be incomplete. Here, we pose three prominent questions for the field that are …
RNA folding to be incomplete. Here, we pose three prominent questions for the field that are …
On the importance of cotranscriptional RNA structure formation
D Lai, JR Proctor, IM Meyer - Rna, 2013 - rnajournal.cshlp.org
The expression of genes, both coding and noncoding, can be significantly influenced by
RNA structural features of their corresponding transcripts. There is by now mounting …
RNA structural features of their corresponding transcripts. There is by now mounting …
[HTML][HTML] Computationally reconstructing cotranscriptional RNA folding from experimental data reveals rearrangement of non-native folding intermediates
MY Angela, PM Gasper, L Cheng, LB Lai, S Kaur… - Molecular cell, 2021 - cell.com
The series of RNA folding events that occur during transcription can critically influence
cellular RNA function. Here, we present reconstructing RNA dynamics from data (R2D2), a …
cellular RNA function. Here, we present reconstructing RNA dynamics from data (R2D2), a …
Thermal adaptation of mRNA secondary structure: stability versus lability
Macromolecular function commonly involves rapidly reversible alterations in three-
dimensional structure (conformation). To allow these essential conformational changes …
dimensional structure (conformation). To allow these essential conformational changes …
Viroid research and its significance for RNA technology and basic biochemistry
G Steger, D Riesner - Nucleic Acids Research, 2018 - academic.oup.com
Viroids were described 47 years ago as the smallest RNA molecules capable of infecting
plants and autonomously self-replicating without an encoded protein. Work on viroids …
plants and autonomously self-replicating without an encoded protein. Work on viroids …
Regulatory effects of cotranscriptional RNA structure formation and transitions
SR Liu, CG Hu, JZ Zhang - Wiley Interdisciplinary Reviews …, 2016 - Wiley Online Library
RNAs, which play significant roles in many fundamental biological processes of life, fold into
sophisticated and precise structures. RNA folding is a dynamic and intricate process, which …
sophisticated and precise structures. RNA folding is a dynamic and intricate process, which …
[HTML][HTML] How to find RNA thermometers
F Righetti, F Narberhaus - Frontiers in cellular and infection …, 2014 - frontiersin.org
Temperature is one of the decisive signals that a mammalian pathogen has entered its warm-
blooded host. Among the many ways to register temperature changes, bacteria often use …
blooded host. Among the many ways to register temperature changes, bacteria often use …
[HTML][HTML] Fixed-parameter tractable sampling for RNA design with multiple target structures
Background The design of multi-stable RNA molecules has important applications in
biology, medicine, and biotechnology. Synthetic design approaches profit strongly from …
biology, medicine, and biotechnology. Synthetic design approaches profit strongly from …
IRIS: A method for predicting in vivo RNA secondary structures using PARIS data
Background RNA secondary structures play a pivotal role in posttranscriptional regulation
and the functions of non‐coding RNAs, yet in vivo RNA secondary structures remain …
and the functions of non‐coding RNAs, yet in vivo RNA secondary structures remain …
RNA‐mediated signal perception in pathogenic bacteria
D Ignatov, J Johansson - Wiley Interdisciplinary Reviews: RNA, 2017 - Wiley Online Library
Bacterial pathogens encounter several different environments during an infection, many of
them possibly being detrimental. In order to sense its surroundings and adjust the gene …
them possibly being detrimental. In order to sense its surroundings and adjust the gene …