Advanced sequencing technologies and their wider impact in microbiology

N Hall - Journal of experimental biology, 2007 - journals.biologists.com
In the past 10 years, microbiology has undergone a revolution that has been driven by
access to cheap high-throughput DNA sequencing. It was not long ago that the cloning and …

Thyroglobulin from molecular and cellular biology to clinical endocrinology

B Di Jeso, P Arvan - Endocrine reviews, 2016 - academic.oup.com
Thyroglobulin (Tg) is a vertebrate secretory protein synthesized in the thyrocyte endoplasmic
reticulum (ER), where it acquires N-linked glycosylation and conformational maturation …

Genome sequence of the human malaria parasite Plasmodium falciparum

MJ Gardner, N Hall, E Fung, O White, M Berriman… - Nature, 2002 - nature.com
The parasite Plasmodium falciparum is responsible for hundreds of millions of cases of
malaria, and kills more than one million African children annually. Here we report an …

Discovery of gene function by expression profiling of the malaria parasite life cycle

KG Le Roch, Y Zhou, PL Blair, M Grainger, JK Moch… - Science, 2003 - science.org
The completion of the genome sequence for Plasmodium falciparum, the species
responsible for most malaria human deaths, has the potential to reveal hundreds of new …

Selective upregulation of a single distinctly structured var gene in chondroitin sulphate A‐adhering Plasmodium falciparum involved in pregnancy‐associated …

A Salanti, T Staalsoe, T Lavstsen… - Molecular …, 2003 - Wiley Online Library
Cytoadhesion of infected red blood cells (iRBC) is mediated through parasite‐encoded,
clonally variant surface antigens (VSA) and is a central process in the pathogenesis of …

Genome-wide analysis of heterochromatin associates clonally variant gene regulation with perinuclear repressive centers in malaria parasites

JJ Lopez-Rubio, L Mancio-Silva, A Scherf - Cell host & microbe, 2009 - cell.com
Clonally variant gene families underlie phenotypic plasticity in Plasmodium falciparum, a
process indispensable for survival of the pathogen in its human host. Differential …

Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology

TD Otto, M Sanders, M Berriman, C Newbold - Bioinformatics, 2010 - academic.oup.com
Motivation: The accuracy of reference genomes is important for downstream analysis but a
low error rate requires expensive manual interrogation of the sequence. Here, we describe a …

Comparative genomics of transcriptional control in the human malaria parasite Plasmodium falciparum

RMR Coulson, N Hall, CA Ouzounis - Genome research, 2004 - genome.cshlp.org
The life cycle of the parasite Plasmodium falciparum, responsible for the most deadly form of
human malaria, requires specialized protein expression for survival in the mammalian host …

Computational analysis of Plasmodium falciparum metabolism: organizing genomic information to facilitate drug discovery

I Yeh, T Hanekamp, S Tsoka, PD Karp… - Genome …, 2004 - genome.cshlp.org
Identification of novel targets for the development of more effective antimalarial drugs and
vaccines is a primary goal of the Plasmodium genome project. However, deciding which …

Prediction of yeast protein–protein interaction network: insights from the Gene Ontology and annotations

X Wu, L Zhu, J Guo, DY Zhang, K Lin - Nucleic acids research, 2006 - academic.oup.com
A map of protein–protein interactions provides valuable insight into the cellular function and
machinery of a proteome. By measuring the similarity between two Gene Ontology (GO) …