Synthetic biology for the directed evolution of protein biocatalysts: navigating sequence space intelligently

A Currin, N Swainston, PJ Day, DB Kell - Chemical Society Reviews, 2015 - pubs.rsc.org
The amino acid sequence of a protein affects both its structure and its function. Thus, the
ability to modify the sequence, and hence the structure and activity, of individual proteins in …

Beyond directed evolution—semi-rational protein engineering and design

S Lutz - Current opinion in biotechnology, 2010 - Elsevier
Over the past two decades, directed evolution has transformed the field of protein
engineering. The advances in understanding protein structure and function, in no …

Thermostable enzymes as biocatalysts in the biofuel industry

CJ Yeoman, Y Han, D Dodd, CM Schroeder… - Advances in applied …, 2010 - Elsevier
Lignocellulose is the most abundant carbohydrate source in nature and represents an ideal
renewable energy source. Thermostable enzymes that hydrolyze lignocellulose to its …

Learning the pattern of epistasis linking genotype and phenotype in a protein

FJ Poelwijk, M Socolich, R Ranganathan - Nature communications, 2019 - nature.com
Understanding the pattern of epistasis—the non-independence of mutations—is critical for
relating genotype and phenotype. However, the combinatorial complexity of potential …

SEEDbodies: fusion proteins based on strand-exchange engineered domain (SEED) CH3 heterodimers in an Fc analogue platform for asymmetric binders or …

JH Davis, C Aperlo, Y Li, E Kurosawa… - … , Design & Selection, 2010 - academic.oup.com
Bispecific antibodies and asymmetric Fc fusion proteins offer opportunities for important
advances in therapeutics. Bivalent IgG depends upon in vivo dimerization of its heavy …

Status of protein engineering for biocatalysts: how to design an industrially useful biocatalyst

AS Bommarius, JK Blum, MJ Abrahamson - Current opinion in chemical …, 2011 - Elsevier
Recent advances in the development of both experimental and computational protein
engineering tools have enabled a number of further successes in the development of …

A family of thermostable fungal cellulases created by structure-guided recombination

P Heinzelman, CD Snow, I Wu… - Proceedings of the …, 2009 - National Acad Sciences
SCHEMA structure-guided recombination of 3 fungal class II cellobiohydrolases (CBH II
cellulases) has yielded a collection of highly thermostable CBH II chimeras. Twenty-three of …

[HTML][HTML] Recent advances in rational approaches for enzyme engineering

K Steiner, H Schwab - Computational and structural biotechnology journal, 2012 - Elsevier
Enzymes are an attractive alternative in the asymmetric syntheses of chiral building blocks.
To meet the requirements of industrial biotechnology and to introduce new functionalities …

Advances in laboratory evolution of enzymes

S Bershtein, DS Tawfik - Current opinion in chemical biology, 2008 - Elsevier
We address recent developments in the area of laboratory, or directed evolution, with a
focus on enzymes and on new methodologies of generic potential. We survey three main …

In vivo selection of a computationally designed SCHEMA AAV library yields a novel variant for infection of adult neural stem cells in the SVZ

DS Ojala, S Sun, JL Santiago-Ortiz, MG Shapiro… - Molecular Therapy, 2018 - cell.com
Directed evolution continues to expand the capabilities of complex biomolecules for a range
of applications, such as adeno-associated virus vectors for gene therapy; however …