Directed evolution of microbial communities
Directed evolution is a form of artificial selection that has been used for decades to find
biomolecules and organisms with new or enhanced functional traits. Directed evolution can …
biomolecules and organisms with new or enhanced functional traits. Directed evolution can …
Insights into constructing a stable and efficient microbial consortium
C Xu, H Yu - Chinese Journal of Chemical Engineering, 2021 - Elsevier
Microbial consortia are ubiquitous in nature, in which multiple microbial species cooperate
to complete some important tasks such as lignocellulose degradation. Because of the …
to complete some important tasks such as lignocellulose degradation. Because of the …
Partitioning of a 2-bit hash function across 66 communicating cells
JP Padmakumar, JJ Sun, W Cho, Y Zhou… - Nature Chemical …, 2024 - nature.com
Powerful distributed computing can be achieved by communicating cells that individually
perform simple operations. Here, we report design software to divide a large genetic circuit …
perform simple operations. Here, we report design software to divide a large genetic circuit …
Engineering a scalable and orthogonal platform for synthetic communication in mammalian cells
AM Makri Pistikou, GAO Cremers, BL Nathalia… - Nature …, 2023 - nature.com
The rational design and implementation of synthetic mammalian communication systems
can unravel fundamental design principles of cell communication circuits and offer a …
can unravel fundamental design principles of cell communication circuits and offer a …
Addressable and adaptable intercellular communication via DNA messaging
JP Marken, RM Murray - Nature Communications, 2023 - nature.com
Engineered consortia are a major research focus for synthetic biologists because they can
implement sophisticated behaviors inaccessible to single-strain systems. However, this …
implement sophisticated behaviors inaccessible to single-strain systems. However, this …
Probing patterning in microbial consortia with a cellular automaton for spatial organisation
Microbial consortia exhibit spatial patterning across diverse environments. Since probing the
self-organization of natural microbial communities is limited by their inherent complexity …
self-organization of natural microbial communities is limited by their inherent complexity …
Biofilm and swarming emergent behaviours controlled through the aid of biophysical understanding and tools
Bacteria can organise themselves into communities in the forms of biofilms and swarms.
Through chemical and physical interactions between cells, these communities exhibit …
Through chemical and physical interactions between cells, these communities exhibit …
Emergent digital bio-computation through spatial diffusion and engineered bacteria
Biological computing is a promising field with potential applications in biosafety,
environmental monitoring, and personalized medicine. Here we present work on the design …
environmental monitoring, and personalized medicine. Here we present work on the design …
FlopR: an open source software package for calibration and normalization of plate reader and flow cytometry data
AJH Fedorec, CM Robinson, KY Wen… - ACS Synthetic …, 2020 - ACS Publications
The measurement of gene expression using fluorescence markers has been a cornerstone
of synthetic biology for the past two decades. However, the use of arbitrary units has limited …
of synthetic biology for the past two decades. However, the use of arbitrary units has limited …
Self-adaptive biosystems through tunable genetic parts and circuits
Biological systems often need to operate in complex environments where conditions can
rapidly change. This is possible because of their inherent ability to sense changes and …
rapidly change. This is possible because of their inherent ability to sense changes and …